Index

_

__add__() (k1lib.cli.init.BaseCli method) __and__() (k1lib.cli.init.BaseCli method) __call__() (graphviz.dot.graphviz.dot.Digraph.Digraph method) (graphviz.dot.graphviz.dot.Graph.Graph method) (k1lib.AutoIncrement method) (k1lib.callbacks.callbacks.Callbacks method) (k1lib.cli.init.BaseCli method) (k1lib.Every method) (k1lib.graphEqn.Variable method) (k1lib.Learner method) (k1lib.mo.Atom method) __contains__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) __dir__() (k1lib.eqn.Eqns method) (k1lib.eqn.System method) __getattr__() (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) __getitem__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) (k1lib.Range method) __hash__() (k1lib.eqn.Eqn method) __init__() (k1lib.AutoIncrement method) (k1lib.callbacks.confusionMatrix.ConfusionMatrix method) (k1lib.callbacks.frozen.Frozen method) (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.landscape.Landscape method) (k1lib.callbacks.limits.CancelOnLowLoss method) (k1lib.callbacks.loss_accuracy.Accuracy method) (k1lib.callbacks.lossFunctions.shorts.LossLambda method) (k1lib.callbacks.lossFunctions.shorts.LossNLLCross method) (k1lib.callbacks.paramFinder.ParamFinder method) (k1lib.cli.bio.translate method) (k1lib.cli.filt.breakIf method) (k1lib.cli.filt.columns method) (k1lib.cli.filt.empty method) (k1lib.cli.filt.filt method) (k1lib.cli.filt.head method) (k1lib.cli.filt.rows method) (k1lib.cli.filt.unique method) (k1lib.cli.grep.grep method) (k1lib.cli.grep.grepTemplate method) (k1lib.cli.grep.grepToTable method) (k1lib.cli.init.BaseCli method) (k1lib.cli.init.manyToMany method) (k1lib.cli.init.manyToManySpecific method) (k1lib.cli.init.oneToMany method) (k1lib.cli.init.serial method) (k1lib.cli.inp.cmd method) (k1lib.cli.inp.toPIL method) (k1lib.cli.kxml.display method) (k1lib.cli.kxml.maxDepth method) (k1lib.cli.kxml.tag method) (k1lib.cli.mgi.batch method) (k1lib.cli.modifier.apply method) (k1lib.cli.modifier.applyMp method) (k1lib.cli.modifier.applyS method) (k1lib.cli.modifier.consume method) (k1lib.cli.modifier.randomize method) (k1lib.cli.modifier.sort method) (k1lib.cli.modifier.sortF method) (k1lib.cli.sam.header method) (k1lib.cli.sam.quality method) (k1lib.cli.structural.AA_ method) (k1lib.cli.structural.accumulate method) (k1lib.cli.structural.batched method) (k1lib.cli.structural.expandE method) (k1lib.cli.structural.joinColumns method) (k1lib.cli.structural.joinList method) (k1lib.cli.structural.peekF method) (k1lib.cli.structural.permute method) (k1lib.cli.structural.repeatFrom method) (k1lib.cli.structural.split method) (k1lib.cli.structural.splitList method) (k1lib.cli.structural.stitch method) (k1lib.cli.structural.table method) (k1lib.cli.structural.toDict method) (k1lib.cli.structural.toDictF method) (k1lib.cli.utils.deref method) (k1lib.cli.utils.size method) (k1lib.cli.utils.to1Str method) (k1lib.cli.utils.toStr method) (k1lib.cli.utils.toTensor method) (k1lib.Domain method) (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) (k1lib.Every method) (k1lib.knn.Lambda method) (k1lib.mo.Atom method) (k1lib.mo.System method) (k1lib.Range method) (k1lib.schedule.Fn method) (k1lib.viz.Carousel method) (k1lib.Wrapper method) __invert__() (k1lib.cli.filt.columns method) (k1lib.cli.filt.empty method) (k1lib.cli.filt.filt method) (k1lib.cli.filt.head method) (k1lib.cli.filt.rows method) (k1lib.cli.modifier.sort method) (k1lib.cli.modifier.sortF method) (k1lib.cli.utils.deref method) (k1lib.Range method)

__iter__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) __len__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) (k1lib.eqn.System method) __lt__() (k1lib.cli.init.BaseCli method) __matmul__() (k1lib.eqn.Eqn method) __or__() (k1lib.cli.init.BaseCli method) __ror__() (k1lib.cli.bio.complement method) (k1lib.cli.bio.longAa method) (k1lib.cli.bio.medAa method) (k1lib.cli.bio.transcribe method) (k1lib.cli.bio.translate method) (k1lib.cli.filt.breakIf method) (k1lib.cli.filt.columns method) (k1lib.cli.filt.empty method) (k1lib.cli.filt.filt method) (k1lib.cli.filt.head method) (k1lib.cli.filt.intersection method) (k1lib.cli.filt.rows method) (k1lib.cli.filt.union method) (k1lib.cli.filt.unique method) (k1lib.cli.gb.feats method) (k1lib.cli.gb.origin method) (k1lib.cli.grep.grep method) (k1lib.cli.grep.grepTemplate method) (k1lib.cli.grep.grepToTable method) (k1lib.cli.init.BaseCli method) (k1lib.cli.init.manyToMany method) (k1lib.cli.init.manyToManySpecific method) (k1lib.cli.init.oneToMany method) (k1lib.cli.init.serial method) (k1lib.cli.inp.cats method) (k1lib.cli.inp.cmd method) (k1lib.cli.inp.toPIL method) (k1lib.cli.kxml.display method) (k1lib.cli.kxml.maxDepth method) (k1lib.cli.kxml.node method) (k1lib.cli.kxml.pretty method) (k1lib.cli.kxml.tag method) (k1lib.cli.mgi.batch method) (k1lib.cli.modifier.apply method) (k1lib.cli.modifier.applyMp method) (k1lib.cli.modifier.applyS method) (k1lib.cli.modifier.consume method) (k1lib.cli.modifier.randomize method) (k1lib.cli.modifier.sort method) (k1lib.cli.modifier.sortF method) (k1lib.cli.modifier.stagger method) (k1lib.cli.output.file method) (k1lib.cli.output.intercept method) (k1lib.cli.output.pretty method) (k1lib.cli.output.stdout method) (k1lib.cli.sam.header method) (k1lib.cli.sam.quality method) (k1lib.cli.structural.AA_ method) (k1lib.cli.structural.accumulate method) (k1lib.cli.structural.batched method) (k1lib.cli.structural.count method) (k1lib.cli.structural.expandE method) (k1lib.cli.structural.joinColumns method) (k1lib.cli.structural.joinList method) (k1lib.cli.structural.joinStreams method) (k1lib.cli.structural.joinStreamsRandom method) (k1lib.cli.structural.peek method) (k1lib.cli.structural.peekF method) (k1lib.cli.structural.permute method) (k1lib.cli.structural.repeat method) (k1lib.cli.structural.repeatFrom method) (k1lib.cli.structural.split method) (k1lib.cli.structural.splitList method) (k1lib.cli.structural.stitch method) (k1lib.cli.structural.table method) (k1lib.cli.structural.toDict method) (k1lib.cli.structural.toDictF method) (k1lib.cli.utils.deref method) (k1lib.cli.utils.equals method) (k1lib.cli.utils.identity method) (k1lib.cli.utils.ignore method) (k1lib.cli.utils.item method) (k1lib.cli.utils.lengths method) (k1lib.cli.utils.reverse method) (k1lib.cli.utils.size method) (k1lib.cli.utils.to1Str method) (k1lib.cli.utils.toAvg method) (k1lib.cli.utils.toIter method) (k1lib.cli.utils.toList method) (k1lib.cli.utils.toMax method) (k1lib.cli.utils.toMin method) (k1lib.cli.utils.toNumpy method) (k1lib.cli.utils.toRange method) (k1lib.cli.utils.toSet method) (k1lib.cli.utils.toStr method) (k1lib.cli.utils.toSum method) (k1lib.cli.utils.toTensor method) (k1lib.cli.utils.wrapList method) (torch.nn.modules.torch.nn.modules.Module.Module method) __round__() (k1lib.eqn.Eqn method)

A

AA_ (class in k1lib.cli.structural) accumulate (class in k1lib.cli.structural) Accuracy (class in k1lib.callbacks.loss_accuracy) alcohol() (in module k1lib.mo) alkane() (in module k1lib.mo) all() (k1lib.cli.init.BaseCli method) (k1lib.cli.modifier.applyS method) analyzeFloat() (in module k1lib.kdata) animate() (k1lib.mo.System method)

append() (k1lib.callbacks.callbacks.Callbacks method) apply (class in k1lib.cli.modifier) apply() (k1lib.selector.ModuleSelector method) applyMp (class in k1lib.cli.modifier) applyS (class in k1lib.cli.modifier) Atom (class in k1lib.mo) atoms() (k1lib.mo.Atom method) AutoIncrement (class in k1lib) Autosave (class in k1lib.callbacks.shorts) availableBonds() (k1lib.mo.Atom property)

B

BaseCli (class in k1lib.cli.init) batch (class in k1lib.cli.mgi) batched (class in k1lib.cli.structural) BatchLimit (class in k1lib.callbacks.limits) Beep (class in k1lib.callbacks.shorts) beep() (in module k1lib)

beepOnAvailable() (in module k1lib.website) blue() (in module k1lib.format) bold() (in module k1lib.format) bond() (k1lib.mo.Atom method) bonds() (k1lib.mo.Atom property) bound() (k1lib.Range method) breakIf (class in k1lib.cli.filt)

C

Callback (class in k1lib.callbacks.callbacks) Callbacks (class in k1lib.callbacks.callbacks) CancelBatchException CancelEpochException CancelOnExplosion (class in k1lib.callbacks.limits) CancelOnHighAccuracy (class in k1lib.callbacks.limits) CancelOnLowLoss (class in k1lib.callbacks.limits) CancelRunException CaptureStdout (class in k1lib) Carousel (class in k1lib.viz) cat() (in module k1lib.cli.inp) (in module k1lib.cli.kcsv) (in module k1lib.cli.sam) cats (class in k1lib.cli.inp) cbs() (k1lib.callbacks.callbacks.Callbacks property) (k1lib.Learner property) checkpointGraph() (k1lib.callbacks.callbacks.Callbacks method) checkpoints() (k1lib.callbacks.callbacks.Timings property) children() (k1lib.selector.ModuleSelector method) clear() (k1lib.callbacks.callbacks.Timings method) (k1lib.callbacks.profiler.Profiler method) clearHooks() (k1lib.callbacks.hookModule.HookModule method) clearLine() (in module k1lib) clearNan() (torch.torch.Tensor.Tensor method) clearProps() (k1lib.selector.ModuleSelector method) cliSettings (k1lib.cli attribute) close() (in module k1lib) cmd (class in k1lib.cli.inp) collate() (in module k1lib.cli.structural) columns (class in k1lib.cli.filt)

complement (class in k1lib.cli.bio) computation() (in module k1lib.format) (k1lib.callbacks.profiler.Profiler property) ComputationProfiler (class in k1lib.callbacks.profilers.computation) computationRate() (in module k1lib.format) ConfusionMatrix (class in k1lib.callbacks.confusionMatrix) confusionMatrix() (in module k1lib.viz) consume (class in k1lib.cli.modifier) contains() (in module k1lib.cli.filt) context() (k1lib.callbacks.callbacks.Callbacks method) copy() (k1lib.Domain method) (k1lib.eqn.Eqn method) (k1lib.Range method) (k1lib.selector.ModuleSelector method) CoreNormal (class in k1lib.callbacks.core) CoreRNN (class in k1lib.callbacks.core) count (class in k1lib.cli.structural) Cpu (class in k1lib.callbacks.shorts) crissCross() (in module k1lib.cli.others) (torch.torch.Tensor.Tensor method) css() (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.hookParam.HookParam method) (k1lib.callbacks.profilers.computation.ComputationProfiler method) (k1lib.callbacks.profilers.io.IOProfiler method) (k1lib.callbacks.profilers.memory.MemoryProfiler method) (k1lib.callbacks.profilers.time.TimeProfiler method) (k1lib.Learner property) Cuda (class in k1lib.callbacks.shorts) curl() (in module k1lib.cli.inp) cut (in module k1lib.cli.filt) cyan() (in module k1lib.format)

D

darkcyan() (in module k1lib.format) darkgrey() (in module k1lib.format) data() (k1lib.Learner property) debounce() (in module k1lib) decorate() (k1lib.viz.SliceablePlot static method) deepestDepth() (k1lib.selector.ModuleSelector property) deref (class in k1lib.cli.utils) derivative() (in module k1lib) detach() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.loss_accuracy.Loss method) (k1lib.callbacks.lossFunctions.shorts.LossNLLCross method)

digraph() (in module k1lib) directParams() (k1lib.selector.ModuleSelector property) display (class in k1lib.cli.kxml) display() (in module k1lib.cli.output) displayF() (k1lib.selector.ModuleSelector property) Domain (class in k1lib) DontTrain (class in k1lib.callbacks.limits) DontTrainValid (class in k1lib.callbacks.shorts) dontWrap() (in module k1lib) DType (class in k1lib.callbacks.shorts) dummy() (in module k1lib.imports)

E

efetch() (in module k1lib.cli.entrez) empirical() (k1lib.mo.Atom method) empty (class in k1lib.cli.filt) endChain() (k1lib.mo.Atom property) endswith() (in module k1lib.cli.filt) EpochLimit (class in k1lib.callbacks.limits) Eqn (class in k1lib.eqn) Eqns (class in k1lib.eqn) equals (class in k1lib.cli.utils)

err() (k1lib.cli.inp.cmd property) esearch() (in module k1lib.cli.entrez) evaluate() (k1lib.Learner method) Every (class in k1lib) executeNb() (in module k1lib) exp() (in module k1lib.schedule) (k1lib.kdata.FunctionData static method) expandE (class in k1lib.cli.structural) exportParams() (torch.nn.modules.torch.nn.modules.Module.Module method)

F

f() (k1lib.cli.init.BaseCli method) FAnim() (in module k1lib.viz) feats (class in k1lib.cli.gb) file (class in k1lib.cli.output) filt (class in k1lib.cli.filt) filt() (k1lib.cli.gb.feats static method) filter() (in module k1lib.selector)

fixOrder() (k1lib.Range method) Fn (class in k1lib.schedule) fromDict() (k1lib.Object static method) fromInts() (k1lib.Domain static method) fromRange() (k1lib.Range method) fromUnit() (k1lib.Range method) Frozen (class in k1lib.callbacks.frozen) FunctionData (class in k1lib.kdata)

G

getParamsVector() (torch.nn.modules.torch.nn.modules.Module.Module method) go() (in module k1lib.cli.bio) GradientClipping (class in k1lib.callbacks.limits) GradientClippingNorm (class in k1lib.callbacks.limits) graph() (in module k1lib) graphviz.dot.Digraph (built-in class)

graphviz.dot.Graph (built-in class) green() (in module k1lib.format) grep (class in k1lib.cli.grep) grepTemplate (class in k1lib.cli.grep) grepToTable (class in k1lib.cli.grep) grey() (in module k1lib.format)

H

hasNan() (torch.torch.Tensor.Tensor method) HBonds() (k1lib.mo.Atom property) head (class in k1lib.cli.filt) header (class in k1lib.cli.sam) headerIdx() (in module k1lib.cli.utils) headOut() (in module k1lib.cli.output)

highlight() (k1lib.selector.ModuleSelector method) histBounds() (torch.torch.Tensor.Tensor method) histScaled() (torch.torch.Tensor.Tensor method) HookModule (class in k1lib.callbacks.hookModule) HookParam (class in k1lib.callbacks.hookParam) hump() (in module k1lib.schedule)

I

identity (class in k1lib.cli.utils) Identity (class in k1lib.knn) identity() (in module k1lib.format) ignore (class in k1lib.cli.utils) ignoreWarnings (class in k1lib) importParams() (torch.nn.modules.torch.nn.modules.Module.Module method) inRange() (in module k1lib.cli.filt) insertColumn() (in module k1lib.cli.structural) insertIdColumn() (in module k1lib.cli.structural) insertRow() (in module k1lib.cli.structural) inSet() (in module k1lib.cli.filt) InspectBatch (class in k1lib.callbacks.shorts) InspectLoss (class in k1lib.callbacks.shorts) InspectOutput (class in k1lib.callbacks.shorts) instanceOf() (in module k1lib.cli.filt)

integrate() (in module k1lib) intercept (class in k1lib.cli.output) intersection (class in k1lib.cli.filt) intIter() (k1lib.Domain method) (k1lib.Range method) inverse() (in module k1lib) (k1lib.kdata.FunctionData static method) io() (k1lib.callbacks.profiler.Profiler property) IOProfiler (class in k1lib.callbacks.profilers.io) isFile() (in module k1lib.cli.filt) isNumeric() (in module k1lib) (in module k1lib.cli.filt) isValue() (in module k1lib.cli.filt) item (class in k1lib.cli.utils) item() (in module k1lib.format) iter() (k1lib.schedule.Fn method)

J

join() (k1lib.eqn.Eqn method) joinColumns (class in k1lib.cli.structural)

joinList (class in k1lib.cli.structural) joinStreams (class in k1lib.cli.structural) joinStreamsRandom (class in k1lib.cli.structural)

K

k1lib module k1lib.callbacks module k1lib.callbacks.callbacks module k1lib.callbacks.confusionMatrix module k1lib.callbacks.core module k1lib.callbacks.frozen module k1lib.callbacks.hookModule module k1lib.callbacks.hookParam module k1lib.callbacks.landscape module k1lib.callbacks.limits module k1lib.callbacks.loss_accuracy module k1lib.callbacks.lossFunctions module k1lib.callbacks.lossFunctions.shorts module k1lib.callbacks.paramFinder module k1lib.callbacks.profiler module k1lib.callbacks.profilers module k1lib.callbacks.profilers.computation module k1lib.callbacks.profilers.io module k1lib.callbacks.profilers.memory module k1lib.callbacks.profilers.time module k1lib.callbacks.progress module k1lib.callbacks.recorder module k1lib.callbacks.shorts module k1lib.cli module k1lib.cli.bio module k1lib.cli.entrez module

k1lib.cli.filt module k1lib.cli.gb module k1lib.cli.grep module k1lib.cli.init module k1lib.cli.inp module k1lib.cli.kcsv module k1lib.cli.kxml module k1lib.cli.mgi module k1lib.cli.modifier module k1lib.cli.others module k1lib.cli.output module k1lib.cli.sam module k1lib.cli.structural module k1lib.cli.utils module k1lib.eqn module k1lib.format module k1lib.graphEqn module k1lib.imports module k1lib.kdata module k1lib.knn module k1lib.mo module k1lib.schedule module k1lib.selector module k1lib.viz module k1lib.website module

L

l() (k1lib.callbacks.callbacks.Callbacks property) Lambda (class in k1lib.knn) Landscape (class in k1lib.callbacks.landscape) Landscape() (k1lib.callbacks.loss_accuracy.Accuracy property) (k1lib.callbacks.loss_accuracy.Loss property) Learner (class in k1lib) leaves() (k1lib.graphEqn.Variable property) lengths (class in k1lib.cli.utils) limitChars() (in module k1lib) limitLines() (in module k1lib) linear() (in module k1lib.schedule) (k1lib.kdata.FunctionData static method)

listToTable() (in module k1lib.cli.structural) load() (k1lib.Learner static method) log() (k1lib.kdata.FunctionData static method) longAa (class in k1lib.cli.bio) Loss (class in k1lib.callbacks.loss_accuracy) lossF() (k1lib.Learner property) LossLambda (class in k1lib.callbacks.lossFunctions.shorts) LossNLLCross (class in k1lib.callbacks.lossFunctions.shorts) lower() (in module k1lib.cli.modifier) ls() (in module k1lib.cli.inp) lstrip() (in module k1lib.cli.modifier)

M

main() (k1lib.kdata.FunctionData static method) (k1lib.mo.Atom method) manyToMany (class in k1lib.cli.init) manyToManySpecific (class in k1lib.cli.init) maxDepth (class in k1lib.cli.kxml) medAa (class in k1lib.cli.bio) memory() (k1lib.callbacks.profiler.Profiler property) MemoryProfiler (class in k1lib.callbacks.profilers.memory) model() (k1lib.Learner property) ModifyBatch (class in k1lib.callbacks.shorts) ModifyLoss (class in k1lib.callbacks.shorts) ModifyOutput (class in k1lib.callbacks.shorts) modifyOutput() (k1lib.schedule.Fn method) module k1lib k1lib.callbacks k1lib.callbacks.callbacks k1lib.callbacks.confusionMatrix k1lib.callbacks.core k1lib.callbacks.frozen k1lib.callbacks.hookModule k1lib.callbacks.hookParam k1lib.callbacks.landscape k1lib.callbacks.limits k1lib.callbacks.loss_accuracy k1lib.callbacks.lossFunctions k1lib.callbacks.lossFunctions.shorts k1lib.callbacks.paramFinder k1lib.callbacks.profiler k1lib.callbacks.profilers k1lib.callbacks.profilers.computation k1lib.callbacks.profilers.io k1lib.callbacks.profilers.memory k1lib.callbacks.profilers.time k1lib.callbacks.progress k1lib.callbacks.recorder k1lib.callbacks.shorts k1lib.cli k1lib.cli.bio k1lib.cli.entrez k1lib.cli.filt k1lib.cli.gb k1lib.cli.grep k1lib.cli.init k1lib.cli.inp k1lib.cli.kcsv k1lib.cli.kxml k1lib.cli.mgi k1lib.cli.modifier k1lib.cli.others k1lib.cli.output k1lib.cli.sam k1lib.cli.structural k1lib.cli.utils k1lib.eqn k1lib.format k1lib.graphEqn k1lib.imports k1lib.kdata k1lib.knn k1lib.mo k1lib.schedule k1lib.selector k1lib.viz k1lib.website

modules() (k1lib.selector.ModuleSelector method) ModuleSelector (class in k1lib.selector) moveLastCTo2ndC() (k1lib.mo.Atom method)

N

named_children() (k1lib.selector.ModuleSelector method) named_modules() (k1lib.selector.ModuleSelector method) nBonds() (k1lib.mo.Atom method) next() (k1lib.mo.Atom method)

nexts() (k1lib.mo.Atom method) node (class in k1lib.cli.kxml) NoFreeElectrons nonHBonds() (k1lib.mo.Atom property) numDigits() (in module k1lib)

O

Object (class in k1lib) OctetFull oneToMany (class in k1lib.cli.init)

opt() (k1lib.Learner property) optimize() (in module k1lib) origin (class in k1lib.cli.gb)

P

parameters() (k1lib.selector.ModuleSelector method) ParamFinder (class in k1lib.callbacks.paramFinder) ParamScheduler (class in k1lib.schedule) paramsContext() (torch.nn.modules.torch.nn.modules.Module.Module method) parse() (in module k1lib.mo) (k1lib.selector.ModuleSelector method) patch() (in module k1lib) pause() (k1lib.callbacks.callbacks.Callback method) peek (class in k1lib.cli.structural) peekF (class in k1lib.cli.structural) perfluoro_ize() (k1lib.mo.Atom method) permute (class in k1lib.cli.structural) pick() (k1lib.eqn.Eqns method) plot() (k1lib.callbacks.callbacks.Timings method) (k1lib.callbacks.confusionMatrix.ConfusionMatrix method) (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.hookParam.HookParam method) (k1lib.callbacks.landscape.Landscape method) (k1lib.callbacks.paramFinder.ParamFinder method) (k1lib.mo.System method)

plotSegments() (in module k1lib.viz) polyfit() (in module k1lib) pop() (k1lib.viz.Carousel method) positionalEncode() (in module k1lib) preserveDevice() (torch.nn.modules.torch.nn.modules.Module.Module method) pretty (class in k1lib.cli.kxml) (class in k1lib.cli.output) Profiler (class in k1lib.callbacks.profiler) ProgressBar (class in k1lib.callbacks.progress) proportionalSlice() (k1lib.Range static method) purple() (in module k1lib.format)

Q

quality (class in k1lib.cli.sam)

R

raiseEx() (in module k1lib) random() (k1lib.AutoIncrement static method) randomize (class in k1lib.cli.modifier) Range (class in k1lib) range_() (k1lib.Range property) record() (k1lib.callbacks.recorder.Recorder method) Recorder (class in k1lib.callbacks.recorder) red() (in module k1lib.format) remove() (in module k1lib.cli.modifier) (k1lib.callbacks.callbacks.Callbacks method) removeBond() (k1lib.mo.Atom method) removePrefix() (k1lib.callbacks.callbacks.Callbacks method) repeat (class in k1lib.cli.structural) repeatF() (in module k1lib.cli.structural) repeatFrom (class in k1lib.cli.structural)

replace() (in module k1lib.cli.modifier) requireCli() (in module k1lib.cli.inp) reset() (k1lib.callbacks.hookModule.HookModule method) resolved() (k1lib.graphEqn.Variable property) restore() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.hookModule.HookModule method) reverse (class in k1lib.cli.utils) round() (k1lib.eqn.Eqn method) rows (class in k1lib.cli.filt) rstrip() (in module k1lib.cli.modifier) run() (k1lib.callbacks.paramFinder.ParamFinder method) (k1lib.callbacks.profilers.computation.ComputationProfiler method) (k1lib.callbacks.profilers.io.IOProfiler method) (k1lib.callbacks.profilers.memory.MemoryProfiler method) (k1lib.callbacks.profilers.time.TimeProfiler method) (k1lib.Learner method)

S

sameEmpirical() (in module k1lib.mo) sample() (k1lib.Learner static method) save() (k1lib.eqn.Eqn method) (k1lib.Learner method) (k1lib.viz.Carousel method) saveBytes() (k1lib.viz.Carousel method) saveFile() (k1lib.viz.Carousel method) saveGraphviz() (k1lib.viz.Carousel method) savePIL() (k1lib.viz.Carousel method) savePlt() (k1lib.viz.Carousel method) select() (in module k1lib.selector) selected() (k1lib.selector.ModuleSelector method) selectedProps (k1lib.selector.ModuleSelector attribute) serial (class in k1lib.cli.init) shape (in module k1lib.cli.utils) sharedTerms() (k1lib.eqn.Eqn method) show() (k1lib.mo.Atom method) showLog() (in module k1lib) simulate() (k1lib.mo.System method) sin() (k1lib.kdata.FunctionData static method) size (class in k1lib.cli.utils) size() (in module k1lib.format) slice_() (k1lib.Range property) SliceablePlot (class in k1lib.viz) smooth() (in module k1lib) (in module k1lib.schedule)

sort (class in k1lib.cli.modifier) sortF (class in k1lib.cli.modifier) spellCheck() (k1lib.eqn.System method) split (class in k1lib.cli.structural) splitColumns (in module k1lib.cli.structural) splitList (class in k1lib.cli.structural) squeeze() (in module k1lib) stagger (class in k1lib.cli.modifier) startBatch() (k1lib.schedule.ParamScheduler method) startRun() (k1lib.schedule.ParamScheduler method) startswith() (in module k1lib.cli.filt) state() (k1lib.callbacks.callbacks.Timings property) (k1lib.Object property) stats() (in module k1lib) stdout (class in k1lib.cli.output) stitch (class in k1lib.cli.structural) strip() (in module k1lib.cli.modifier) substances() (in module k1lib.mo) suggestedValue() (k1lib.callbacks.paramFinder.ParamFinder property) suspend() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.callbacks.Callbacks method) (k1lib.callbacks.hookModule.HookModule method) suspendClasses() (k1lib.callbacks.callbacks.Callbacks method) suspendEval() (k1lib.callbacks.callbacks.Callbacks method) System (class in k1lib.eqn) (class in k1lib.mo) system() (k1lib.mo.Atom method)

T

tab() (in module k1lib) table (class in k1lib.cli.structural) tableFromList() (in module k1lib.cli.structural) tag (class in k1lib.cli.kxml) tag() (k1lib.cli.gb.feats static method) textToHtml() (in module k1lib) tfFloat() (in module k1lib.kdata) tfImg() (in module k1lib.kdata) till() (k1lib.cli.grep.grep method) time() (in module k1lib.format) (k1lib.callbacks.profiler.Profiler property) TimeLimit (class in k1lib.callbacks.limits) TimeProfiler (class in k1lib.callbacks.profilers.time) Timings (class in k1lib.callbacks.callbacks) timings() (k1lib.callbacks.callbacks.Callbacks property) to1Str (class in k1lib.cli.utils) toAvg (class in k1lib.cli.utils) toDict (class in k1lib.cli.structural) toDictF (class in k1lib.cli.structural) toFloat() (in module k1lib.cli.modifier)

toInt() (in module k1lib.cli.modifier) toIter (class in k1lib.cli.utils) toList (class in k1lib.cli.utils) toMax (class in k1lib.cli.utils) toMean (in module k1lib.cli.utils) toMin (class in k1lib.cli.utils) toNumpy (class in k1lib.cli.utils) toPIL (class in k1lib.cli.inp) toRange (class in k1lib.cli.utils) toRange() (k1lib.Range method) torch.nn.modules.Module (built-in class) torch.Tensor (built-in class) toSet (class in k1lib.cli.utils) toStr (class in k1lib.cli.utils) toSum (class in k1lib.cli.utils) toTensor (class in k1lib.cli.utils) toUnit() (k1lib.Range method) tpAvailable() (k1lib.callbacks.profilers.computation.ComputationProfiler property) transcribe (class in k1lib.cli.bio) translate (class in k1lib.cli.bio) transpose (in module k1lib.cli.structural)

U

underline() (in module k1lib.format) union (class in k1lib.cli.filt) unique (class in k1lib.cli.filt)

uniqueBonds() (k1lib.mo.Atom property) uniqueNonHBonds() (k1lib.mo.Atom property) upper() (in module k1lib.cli.modifier)

V

v() (k1lib.mo.System method) value() (k1lib.AutoIncrement property) (k1lib.graphEqn.Variable property) (k1lib.schedule.Fn property)

Variable (class in k1lib.graphEqn)

W

wget() (in module k1lib.cli.inp) withAccuracy() (k1lib.callbacks.callbacks.Callbacks method) withAdvanced() (k1lib.callbacks.callbacks.Callbacks method) withAutoDeclare() (k1lib.Object method) withAutosave() (k1lib.callbacks.callbacks.Callbacks method) withBackwardHook() (k1lib.callbacks.hookModule.HookModule method) withBasics() (k1lib.callbacks.callbacks.Callbacks method) withBatchLimit() (k1lib.callbacks.callbacks.Callbacks method) withBeep() (k1lib.callbacks.callbacks.Callbacks method) withCancelOnExplosion() (k1lib.callbacks.callbacks.Callbacks method) withCancelOnHighAccuracy() (k1lib.callbacks.callbacks.Callbacks method) withCancelOnLowLoss() (k1lib.callbacks.callbacks.Callbacks method) withCheckpoint() (k1lib.callbacks.callbacks.Callback method) withConfusionMatrix() (k1lib.callbacks.callbacks.Callbacks method) withCoreNormal() (k1lib.callbacks.callbacks.Callbacks method) withCoreRNN() (k1lib.callbacks.callbacks.Callbacks method) withCpu() (k1lib.callbacks.callbacks.Callbacks method) withCuda() (k1lib.callbacks.callbacks.Callbacks method) withDontTrain() (k1lib.callbacks.callbacks.Callbacks method) withDontTrainValid() (k1lib.callbacks.callbacks.Callbacks method) withDType() (k1lib.callbacks.callbacks.Callbacks method) withEpochLimit() (k1lib.callbacks.callbacks.Callbacks method) withForwardHook() (k1lib.callbacks.hookModule.HookModule method) withFrozen() (k1lib.callbacks.callbacks.Callbacks method) withGradientClipping() (k1lib.callbacks.callbacks.Callbacks method) withGradientClippingNorm() (k1lib.callbacks.callbacks.Callbacks method) withHook() (k1lib.callbacks.hookModule.HookModule method) withHookModule() (k1lib.callbacks.callbacks.Callbacks method)

withHookParam() (k1lib.callbacks.callbacks.Callbacks method) withInspectBatch() (k1lib.callbacks.callbacks.Callbacks method) withInspectLoss() (k1lib.callbacks.callbacks.Callbacks method) withInspectOutput() (k1lib.callbacks.callbacks.Callbacks method) withLandscape() (k1lib.callbacks.callbacks.Callbacks method) withLoss() (k1lib.callbacks.callbacks.Callbacks method) withLossCrossEntropy() (k1lib.callbacks.callbacks.Callbacks method) withLossLambda() (k1lib.callbacks.callbacks.Callbacks method) withLossNLL() (k1lib.callbacks.callbacks.Callbacks method) withMaxRecorder() (k1lib.callbacks.hookModule.HookModule method) withMeanRecorder() (k1lib.callbacks.hookModule.HookModule method) withMinRecorder() (k1lib.callbacks.hookModule.HookModule method) withModifyBatch() (k1lib.callbacks.callbacks.Callbacks method) withModifyLoss() (k1lib.callbacks.callbacks.Callbacks method) withModifyOutput() (k1lib.callbacks.callbacks.Callbacks method) withParamFinder() (k1lib.callbacks.callbacks.Callbacks method) withParamScheduler() (k1lib.callbacks.callbacks.Callbacks method) withProfiler() (k1lib.callbacks.callbacks.Callbacks method) withProgressBar() (k1lib.callbacks.callbacks.Callbacks method) withQOL() (k1lib.callbacks.callbacks.Callbacks method) withRecorder() (k1lib.callbacks.callbacks.Callbacks method) withRepr() (k1lib.Object method) withs() (k1lib.callbacks.callbacks.Callbacks property) withStdRecorder() (k1lib.callbacks.hookModule.HookModule method) withTimeLimit() (k1lib.callbacks.callbacks.Callbacks method) wrapList (class in k1lib.cli.utils) Wrapper (class in k1lib) wraps() (in module k1lib)

X

x() (k1lib.mo.System method)

Y

yellow() (in module k1lib.format)

yieldSentinel (in module k1lib.cli.structural)