Index

_

__add__() (k1lib.cli.init.BaseCli method) __and__() (k1lib.cli.init.BaseCli method) __call__() (graphviz.dot.Digraph method) (graphviz.dot.Graph method) (k1lib.AutoIncrement method) (k1lib.callbacks.callbacks.Callbacks method) (k1lib.cli.init.BaseCli method) (k1lib.Every method) (k1lib.graphEqn.Variable method) (k1lib.Learner method) (k1lib.mo.Atom method) (k1lib.selector.ModuleSelector method) __contains__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) (k1lib.selector.ModuleSelector method) __dir__() (k1lib.eqn.Eqns method) (k1lib.eqn.System method) __getattr__() (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) __getitem__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) (k1lib.Range method) __hash__() (k1lib.eqn.Eqn method) __init__() (k1lib.Absorber method) (k1lib.AutoIncrement method) (k1lib.callbacks.confusionMatrix.ConfusionMatrix method) (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.landscape.Landscape method) (k1lib.callbacks.limits.CancelOnLowLoss method) (k1lib.callbacks.limits.TrainOnly method) (k1lib.callbacks.limits.ValidOnly method) (k1lib.callbacks.loss_accuracy.Accuracy method) (k1lib.callbacks.loss_accuracy.Loss method) (k1lib.callbacks.lossFunctions.accuracy.AccF method) (k1lib.callbacks.lossFunctions.shorts.LossF method) (k1lib.callbacks.lossFunctions.shorts.LossNLLCross method) (k1lib.callbacks.paramFinder.ParamFinder method) (k1lib.cli.bio.translate method) (k1lib.cli.filt.breakIf method) (k1lib.cli.filt.columns method) (k1lib.cli.filt.empty method) (k1lib.cli.filt.filt method) (k1lib.cli.filt.head method) (k1lib.cli.filt.intersection method) (k1lib.cli.filt.mask method) (k1lib.cli.filt.rows method) (k1lib.cli.filt.union method) (k1lib.cli.filt.unique method) (k1lib.cli.grep.grep method) (k1lib.cli.grep.grepTemplate method) (k1lib.cli.init.BaseCli method) (k1lib.cli.init.manyToMany method) (k1lib.cli.init.mtmS method) (k1lib.cli.init.oneToMany method) (k1lib.cli.init.serial method) (k1lib.cli.inp.cmd method) (k1lib.cli.kxml.display method) (k1lib.cli.kxml.maxDepth method) (k1lib.cli.kxml.pretty method) (k1lib.cli.kxml.tags method) (k1lib.cli.mgi.batch method) (k1lib.cli.modifier.apply method) (k1lib.cli.modifier.applyMp method) (k1lib.cli.modifier.applyS method) (k1lib.cli.modifier.applySerial method) (k1lib.cli.modifier.applyTh method) (k1lib.cli.modifier.consume method) (k1lib.cli.modifier.integrate method) (k1lib.cli.modifier.op method) (k1lib.cli.modifier.randomize method) (k1lib.cli.modifier.sort method) (k1lib.cli.modifier.sortF method) (k1lib.cli.modifier.stagger method) (k1lib.cli.nb.execute method) (k1lib.cli.nb.pretty method) (k1lib.cli.output.file method) (k1lib.cli.output.intercept method) (k1lib.cli.output.pretty method) (k1lib.cli.output.stdout method) (k1lib.cli.output.tee method) (k1lib.cli.sam.flag method) (k1lib.cli.sam.header method) (k1lib.cli.structural.AA_ method) (k1lib.cli.structural.accumulate method) (k1lib.cli.structural.activeSamples method) (k1lib.cli.structural.batched method) (k1lib.cli.structural.count method) (k1lib.cli.structural.expandE method) (k1lib.cli.structural.joinList method) (k1lib.cli.structural.joinStreams method) (k1lib.cli.structural.joinStreamsRandom method) (k1lib.cli.structural.peek method) (k1lib.cli.structural.peekF method) (k1lib.cli.structural.permute method) (k1lib.cli.structural.repeat method) (k1lib.cli.structural.repeatFrom method) (k1lib.cli.structural.reshape method) (k1lib.cli.structural.splitW method) (k1lib.cli.structural.toDict method) (k1lib.cli.structural.toDictF method) (k1lib.cli.structural.transpose method) (k1lib.cli.structural.window method) (k1lib.cli.trace.trace method) (k1lib.cli.utils.bindec method) (k1lib.cli.utils.clipboard method) (k1lib.cli.utils.deref method) (k1lib.cli.utils.equals method) (k1lib.cli.utils.identity method) (k1lib.cli.utils.ignore method) (k1lib.cli.utils.item method) (k1lib.cli.utils.join method) (k1lib.cli.utils.lengths method) (k1lib.cli.utils.rateLimit method) (k1lib.cli.utils.reverse method) (k1lib.cli.utils.size method) (k1lib.cli.utils.toAvg method) (k1lib.cli.utils.toBin method) (k1lib.cli.utils.toIdx method) (k1lib.cli.utils.toIter method) (k1lib.cli.utils.toList method) (k1lib.cli.utils.toMax method) (k1lib.cli.utils.toMin method) (k1lib.cli.utils.toNumpy method) (k1lib.cli.utils.toPIL method) (k1lib.cli.utils.toRange method) (k1lib.cli.utils.toRgb method) (k1lib.cli.utils.toRgba method) (k1lib.cli.utils.toSet method) (k1lib.cli.utils.toStr method) (k1lib.cli.utils.toSum method) (k1lib.cli.utils.toTensor method) (k1lib.cli.utils.toType method) (k1lib.cli.utils.wrapList method) (k1lib.Domain method) (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) (k1lib.Every method) (k1lib.knn.Lambda method) (k1lib.knn.LinBlock method) (k1lib.knn.MultiheadAttention method) (k1lib.MaxDepth method) (k1lib.mo.Atom method) (k1lib.mo.System method) (k1lib.MovingAvg method) (k1lib.Range method) (k1lib.RunOnce method) (k1lib.schedule.Fn method) (k1lib.Settings method) (k1lib.viz.Carousel method) (k1lib.wrapMod method) (k1lib.Wrapper method)

__invert__() (k1lib.Absorber method) (k1lib.cli.filt.columns method) (k1lib.cli.filt.empty method) (k1lib.cli.filt.filt method) (k1lib.cli.filt.head method) (k1lib.cli.filt.rows method) (k1lib.cli.modifier.sort method) (k1lib.cli.modifier.sortF method) (k1lib.cli.utils.deref method) (k1lib.Range method) __iter__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) __len__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) (k1lib.eqn.System method) __lt__() (k1lib.cli.init.BaseCli method) __matmul__() (k1lib.eqn.Eqn method) __or__() (k1lib.cli.init.BaseCli method) __ror__() (k1lib.Absorber method) (k1lib.cli.bio.complement method) (k1lib.cli.bio.longAa method) (k1lib.cli.bio.medAa method) (k1lib.cli.bio.transcribe method) (k1lib.cli.bio.translate method) (k1lib.cli.filt.breakIf method) (k1lib.cli.filt.columns method) (k1lib.cli.filt.empty method) (k1lib.cli.filt.filt method) (k1lib.cli.filt.head method) (k1lib.cli.filt.intersection method) (k1lib.cli.filt.mask method) (k1lib.cli.filt.rows method) (k1lib.cli.filt.union method) (k1lib.cli.filt.unique method) (k1lib.cli.gb.feats method) (k1lib.cli.gb.origin method) (k1lib.cli.grep.grep method) (k1lib.cli.grep.grepTemplate method) (k1lib.cli.init.BaseCli method) (k1lib.cli.init.manyToMany method) (k1lib.cli.init.mtmS method) (k1lib.cli.init.oneToMany method) (k1lib.cli.init.serial method) (k1lib.cli.inp.cmd method) (k1lib.cli.kxml.display method) (k1lib.cli.kxml.maxDepth method) (k1lib.cli.kxml.node method) (k1lib.cli.kxml.pretty method) (k1lib.cli.kxml.tags method) (k1lib.cli.mgi.batch method) (k1lib.cli.modifier.apply method) (k1lib.cli.modifier.applyMp method) (k1lib.cli.modifier.applyS method) (k1lib.cli.modifier.applySerial method) (k1lib.cli.modifier.applyTh method) (k1lib.cli.modifier.consume method) (k1lib.cli.modifier.integrate method) (k1lib.cli.modifier.op method) (k1lib.cli.modifier.randomize method) (k1lib.cli.modifier.sort method) (k1lib.cli.modifier.sortF method) (k1lib.cli.modifier.stagger method) (k1lib.cli.nb.execute method) (k1lib.cli.nb.pretty method) (k1lib.cli.output.file method) (k1lib.cli.output.intercept method) (k1lib.cli.output.pretty method) (k1lib.cli.output.stdout method) (k1lib.cli.output.tee method) (k1lib.cli.sam.header method) (k1lib.cli.structural.AA_ method) (k1lib.cli.structural.accumulate method) (k1lib.cli.structural.batched method) (k1lib.cli.structural.count method) (k1lib.cli.structural.expandE method) (k1lib.cli.structural.joinList method) (k1lib.cli.structural.joinStreams method) (k1lib.cli.structural.joinStreamsRandom method) (k1lib.cli.structural.peek method) (k1lib.cli.structural.peekF method) (k1lib.cli.structural.permute method) (k1lib.cli.structural.repeat method) (k1lib.cli.structural.repeatFrom method) (k1lib.cli.structural.reshape method) (k1lib.cli.structural.splitW method) (k1lib.cli.structural.toDict method) (k1lib.cli.structural.toDictF method) (k1lib.cli.structural.transpose method) (k1lib.cli.structural.window method) (k1lib.cli.utils.bindec method) (k1lib.cli.utils.clipboard method) (k1lib.cli.utils.deref method) (k1lib.cli.utils.equals method) (k1lib.cli.utils.identity method) (k1lib.cli.utils.ignore method) (k1lib.cli.utils.item method) (k1lib.cli.utils.join method) (k1lib.cli.utils.lengths method) (k1lib.cli.utils.rateLimit method) (k1lib.cli.utils.reverse method) (k1lib.cli.utils.size method) (k1lib.cli.utils.toAvg method) (k1lib.cli.utils.toBin method) (k1lib.cli.utils.toIdx method) (k1lib.cli.utils.toIter method) (k1lib.cli.utils.toList method) (k1lib.cli.utils.toMax method) (k1lib.cli.utils.toMin method) (k1lib.cli.utils.toNumpy method) (k1lib.cli.utils.toPIL method) (k1lib.cli.utils.toRange method) (k1lib.cli.utils.toRgb method) (k1lib.cli.utils.toRgba method) (k1lib.cli.utils.toSet method) (k1lib.cli.utils.toStr method) (k1lib.cli.utils.toSum method) (k1lib.cli.utils.toTensor method) (k1lib.cli.utils.toType method) (k1lib.cli.utils.wrapList method) (torch.nn.modules.Module method) __round__() (k1lib.eqn.Eqn method)

A

AA_ (class in k1lib.cli.structural) ab_contains() (k1lib.Absorber method) ab_fastF() (k1lib.Absorber method) ab_float() (k1lib.Absorber method) ab_int() (k1lib.Absorber method) ab_len() (k1lib.Absorber method) ab_operate() (k1lib.Absorber method) ab_str() (k1lib.Absorber method) Absorber (class in k1lib) AccF (class in k1lib.callbacks.lossFunctions.accuracy) accumulate (class in k1lib.cli.structural) Accuracy (class in k1lib.callbacks.loss_accuracy) activeSamples (class in k1lib.cli.structural) add() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.Settings method) alcohol() (in module k1lib.mo) alkane() (in module k1lib.mo) all() (k1lib.cli.init.BaseCli method) analyzeFloat() (in module k1lib.kdata)

animate() (k1lib.mo.System method) (matplotlib.pyplot method) append() (k1lib.cli.structural.activeSamples method) apply (class in k1lib.cli.modifier) apply() (k1lib.selector.ModuleSelector method) applyMp (class in k1lib.cli.modifier) applyS (class in k1lib.cli.modifier) applySerial (class in k1lib.cli.modifier) applyTh (class in k1lib.cli.modifier) aS (in module k1lib.cli.modifier) Atom (class in k1lib.mo) atoms() (k1lib.mo.Atom method) attached() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.lossFunctions.accuracy.AccF method) (k1lib.callbacks.lossFunctions.shorts.LossNLLCross method) attrContext (class in k1lib) AutoIncrement (class in k1lib) Autosave (class in k1lib.callbacks.shorts) availableBonds() (k1lib.mo.Atom property)

B

bam() (k1lib.cli.bio.idx static method) BaseCli (class in k1lib.cli.init) batch (class in k1lib.cli.mgi) batched (class in k1lib.cli.structural) BatchLimit (class in k1lib.callbacks.limits) Beep (class in k1lib.callbacks.shorts) beep() (in module k1lib) bindec (class in k1lib.cli.utils)

blast() (k1lib.cli.bio.idx static method) blue() (k1lib.fmt.txt static method) bold() (k1lib.fmt.txt static method) bond() (k1lib.mo.Atom method) bonds() (k1lib.mo.Atom property) bound() (k1lib.Range method) breakIf (class in k1lib.cli.filt) bwa() (k1lib.cli.bio.idx static method)

C

Callback (class in k1lib.callbacks.callbacks) Callbacks (class in k1lib.callbacks.callbacks) CancelBatchException CancelEpochException CancelOnExplosion (class in k1lib.callbacks.limits) CancelOnHighAccuracy (class in k1lib.callbacks.limits) CancelOnLowLoss (class in k1lib.callbacks.limits) CancelRunException captureStdout (class in k1lib) Carousel (class in k1lib.viz) cat() (in module k1lib.cli.inp) (in module k1lib.cli.kcsv) (in module k1lib.cli.sam) categories (k1lib.callbacks.confusionMatrix.ConfusionMatrix attribute) Cbs (in module k1lib.callbacks.callbacks) cbs() (k1lib.callbacks.callbacks.Callbacks property) (k1lib.Learner property) cells() (in module k1lib.cli.nb) checkpointGraph() (k1lib.callbacks.callbacks.Callbacks method) checkpoints() (k1lib.callbacks.callbacks.Timings property) children() (k1lib.selector.ModuleSelector method) clear() (k1lib.callbacks.callbacks.Timings method) (k1lib.callbacks.loss_accuracy.Accuracy method) (k1lib.callbacks.loss_accuracy.Loss method) (k1lib.callbacks.profiler.Profiler method) clearHooks() (k1lib.callbacks.hookModule.HookModule method) clearLine() (in module k1lib) clearNan() (torch.Tensor method) clearPools() (k1lib.cli.modifier.applyMp static method) clearProps() (k1lib.selector.ModuleSelector method) clipboard (class in k1lib.cli.utils) close() (in module k1lib) cmd (class in k1lib.cli.inp) collate() (in module k1lib.cli.structural)

columns (class in k1lib.cli.filt) comp() (in module k1lib.fmt) complement (class in k1lib.cli.bio) compRate() (in module k1lib.fmt) computation() (k1lib.callbacks.profiler.Profiler property) ComputationProfiler (class in k1lib.callbacks.profilers.computation) ConfusionMatrix (class in k1lib.callbacks.confusionMatrix) confusionMatrix() (in module k1lib.viz) consume (class in k1lib.cli.modifier) contains() (in module k1lib.cli.filt) context() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.Settings method) copy() (k1lib.Domain method) (k1lib.eqn.Eqn method) (k1lib.Range method) CoreNormal (class in k1lib.callbacks.core) CoreRNN (class in k1lib.callbacks.core) count (class in k1lib.cli.structural) Cpu (class in k1lib.callbacks.shorts) cpu() (k1lib.cli.utils.rateLimit static method) cr() (k1lib.cli.output.tee static method) crissCross() (in module k1lib.cli.others) (torch.Tensor method) crt() (k1lib.cli.output.tee static method) css() (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.hookParam.HookParam method) (k1lib.callbacks.profilers.computation.ComputationProfiler method) (k1lib.callbacks.profilers.io.IOProfiler method) (k1lib.callbacks.profilers.memory.MemoryProfiler method) (k1lib.callbacks.profilers.time.TimeProfiler method) (k1lib.Learner property) Cuda (class in k1lib.callbacks.shorts) curl() (in module k1lib.cli.inp) cut (in module k1lib.cli.filt) cyan() (k1lib.fmt.txt static method)

D

darkcyan() (k1lib.fmt.txt static method) darkgrey() (k1lib.fmt.txt static method) data() (k1lib.Learner property) debounce() (in module k1lib) decorate() (k1lib.viz.SliceablePlot static method) deepestDepth() (k1lib.selector.ModuleSelector property) deref (class in k1lib.cli.utils) derivative() (in module k1lib) detach() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.loss_accuracy.Loss method) (k1lib.callbacks.lossFunctions.accuracy.AccF method) (k1lib.callbacks.lossFunctions.shorts.LossNLLCross method) deviceContext() (torch.nn.modules.Module method)

digraph() (in module k1lib) directParams() (k1lib.selector.ModuleSelector property) display (class in k1lib.cli.kxml) display() (in module k1lib.cli.output) displayF() (k1lib.selector.ModuleSelector property) Domain (class in k1lib) done() (k1lib.RunOnce method) DontTrain (class in k1lib.callbacks.limits) DontTrainValid (class in k1lib.callbacks.shorts) dontWrap() (in module k1lib) DType (class in k1lib.callbacks.shorts) dummy() (in module k1lib._monkey) (in module k1lib.imports)

E

efetch() (in module k1lib.cli.entrez) empirical() (k1lib.mo.Atom method) empty (class in k1lib.cli.filt) endChain() (k1lib.mo.Atom property) enter() (k1lib.MaxDepth method) EpochLimit (class in k1lib.callbacks.limits) Eqn (class in k1lib.eqn) Eqns (class in k1lib.eqn) equals (class in k1lib.cli.utils)

esearch() (in module k1lib.cli.entrez) evaluate() (k1lib.Learner method) Every (class in k1lib) execute (class in k1lib.cli.nb) exp() (in module k1lib.schedule) (k1lib.kdata.FunctionData static method) expandE (class in k1lib.cli.structural) exportParams() (torch.nn.modules.Module method) extend() (k1lib.cli.structural.activeSamples method)

F

f() (k1lib.cli.init.BaseCli method) (k1lib.cli.init.mtmS static method) FAnim() (in module k1lib.viz) fastF() (in module k1lib.cli.init) feats (class in k1lib.cli.gb) file (class in k1lib.cli.output) fill() (k1lib.cli.structural.transpose static method) filt (class in k1lib.cli.filt) filt() (k1lib.cli.gb.feats static method) fixOrder() (k1lib.Range method)

flag (class in k1lib.cli.sam) Fn (class in k1lib.schedule) forward() (k1lib.knn.Lambda method) (k1lib.knn.LinBlock method) (k1lib.knn.MultiheadAttention method) freeze() (k1lib.selector.ModuleSelector method) fromDict() (k1lib.Object static method) fromInts() (k1lib.Domain static method) fromRange() (k1lib.Range method) fromUnit() (k1lib.Range method) FunctionData (class in k1lib.kdata)

G

generic() (in module k1lib.fmt) getParamsVector() (torch.nn.modules.Module method) go() (in module k1lib.cli.bio) goodMatrix() (k1lib.callbacks.confusionMatrix.ConfusionMatrix property) gradContext() (torch.nn.modules.Module method) GradientClipping (class in k1lib.callbacks.limits)

GradientClippingNorm (class in k1lib.callbacks.limits) graph() (in module k1lib) green() (k1lib.fmt.txt static method) grep (class in k1lib.cli.grep) grepTemplate (class in k1lib.cli.grep) grey() (k1lib.fmt.txt static method)

H

hasInfs() (torch.Tensor method) hasNan() (torch.Tensor method) HBonds() (k1lib.mo.Atom property) head (class in k1lib.cli.filt) header (class in k1lib.cli.sam) headerIdx() (in module k1lib.cli.utils) headOut() (in module k1lib.cli.output) highlight() (k1lib.selector.ModuleSelector method)

histBounds() (torch.Tensor method) histScaled() (torch.Tensor method) hookB() (k1lib.selector.ModuleSelector method) hookF() (k1lib.selector.ModuleSelector method) hookFp() (k1lib.selector.ModuleSelector method) HookModule (class in k1lib.callbacks.hookModule) HookParam (class in k1lib.callbacks.hookParam) hump() (in module k1lib.schedule)

I

iden (in module k1lib.cli.utils) identity (class in k1lib.cli.utils) Identity (class in k1lib.knn) identity() (k1lib.fmt.txt static method) idx (class in k1lib.cli.bio) (k1lib.selector.ModuleSelector attribute) ignore (class in k1lib.cli.utils) ignoreWarnings (class in k1lib) importParams() (torch.nn.modules.Module method) inRange() (in module k1lib.cli.filt) insertColumn() (in module k1lib.cli.structural) insertIdColumn() (in module k1lib.cli.structural) insertRow() (in module k1lib.cli.structural) inSet() (in module k1lib.cli.filt) InspectBatch (class in k1lib.callbacks.shorts) InspectLoss (class in k1lib.callbacks.shorts)

InspectOutput (class in k1lib.callbacks.shorts) instanceOf() (in module k1lib.cli.filt) integrate (class in k1lib.cli.modifier) integrate() (in module k1lib) intercept (class in k1lib.cli.output) intersection (class in k1lib.cli.filt) intIter() (k1lib.Domain method) (k1lib.Range method) inverse() (in module k1lib) (k1lib.kdata.FunctionData static method) io() (k1lib.callbacks.profiler.Profiler property) IOProfiler (class in k1lib.callbacks.profilers.io) isNumeric() (in module k1lib) (in module k1lib.cli.filt) item (class in k1lib.cli.utils) item() (in module k1lib.fmt) iter() (k1lib.schedule.Fn method)

J

join (class in k1lib.cli.utils) join() (k1lib.cli.structural.count static method) (k1lib.eqn.Eqn method)

joinList (class in k1lib.cli.structural) joinStreams (class in k1lib.cli.structural) joinStreamsRandom (class in k1lib.cli.structural)

K

k1lib module k1lib._monkey module k1lib.callbacks module k1lib.callbacks.callbacks module k1lib.callbacks.confusionMatrix module k1lib.callbacks.core module k1lib.callbacks.hookModule module k1lib.callbacks.hookParam module k1lib.callbacks.landscape module k1lib.callbacks.limits module k1lib.callbacks.loss_accuracy module k1lib.callbacks.lossFunctions module k1lib.callbacks.lossFunctions.accuracy module k1lib.callbacks.lossFunctions.shorts module k1lib.callbacks.paramFinder module k1lib.callbacks.profiler module k1lib.callbacks.profilers module k1lib.callbacks.profilers.computation module k1lib.callbacks.profilers.io module k1lib.callbacks.profilers.memory module k1lib.callbacks.profilers.time module k1lib.callbacks.progress module k1lib.callbacks.recorder module k1lib.callbacks.shorts module k1lib.cli module k1lib.cli.bio module k1lib.cli.entrez module

k1lib.cli.filt module k1lib.cli.gb module k1lib.cli.grep module k1lib.cli.init module k1lib.cli.inp module k1lib.cli.kcsv module k1lib.cli.kxml module k1lib.cli.mgi module k1lib.cli.modifier module k1lib.cli.nb module k1lib.cli.others module k1lib.cli.output module k1lib.cli.sam module k1lib.cli.structural module k1lib.cli.trace module k1lib.cli.utils module k1lib.eqn module k1lib.fmt module k1lib.graphEqn module k1lib.imports module k1lib.kdata module k1lib.knn module k1lib.mo module k1lib.schedule module k1lib.selector module k1lib.viz module k3d() (matplotlib.pyplot method)

L

l() (k1lib.callbacks.callbacks.Callbacks property) Lambda (class in k1lib.knn) Landscape (class in k1lib.callbacks.landscape) Landscape() (k1lib.callbacks.loss_accuracy.Accuracy property) (k1lib.callbacks.loss_accuracy.Loss property) last (k1lib.cli.trace.trace attribute) Learner (class in k1lib) leaves() (k1lib.graphEqn.Variable property) lengths (class in k1lib.cli.utils) limitChars() (in module k1lib) limitLines() (in module k1lib) LinBlock (class in k1lib.knn)

line() (mpl_toolkits.mplot3d.axes3d.Axes3D method) linear() (in module k1lib.schedule) (k1lib.kdata.FunctionData static method) load() (k1lib.Learner static method) log() (k1lib.kdata.FunctionData static method) loglinspace() (k1lib._monkey.torch method) longAa (class in k1lib.cli.bio) longFa() (in module k1lib.cli.bio) Loss (class in k1lib.callbacks.loss_accuracy) LossF (class in k1lib.callbacks.lossFunctions.shorts) lossF() (k1lib.Learner property) LossNLLCross (class in k1lib.callbacks.lossFunctions.shorts) ls() (in module k1lib.cli.inp)

M

main() (k1lib.kdata.FunctionData static method) (k1lib.mo.Atom method) manyToMany (class in k1lib.cli.init) march() (mpl_toolkits.mplot3d.axes3d.Axes3D method) mask (class in k1lib.cli.filt) mask() (in module k1lib.viz) matrix (k1lib.callbacks.confusionMatrix.ConfusionMatrix attribute) MaxDepth (class in k1lib) maxDepth (class in k1lib.cli.kxml) medAa (class in k1lib.cli.bio) memory() (k1lib.callbacks.profiler.Profiler property) MemoryProfiler (class in k1lib.callbacks.profilers.memory) model() (k1lib.Learner property) ModifyBatch (class in k1lib.callbacks.shorts) ModifyLoss (class in k1lib.callbacks.shorts) ModifyOutput (class in k1lib.callbacks.shorts) modifyOutput() (k1lib.schedule.Fn method) module k1lib k1lib._monkey k1lib.callbacks k1lib.callbacks.callbacks k1lib.callbacks.confusionMatrix k1lib.callbacks.core k1lib.callbacks.hookModule k1lib.callbacks.hookParam k1lib.callbacks.landscape k1lib.callbacks.limits k1lib.callbacks.loss_accuracy k1lib.callbacks.lossFunctions k1lib.callbacks.lossFunctions.accuracy k1lib.callbacks.lossFunctions.shorts k1lib.callbacks.paramFinder k1lib.callbacks.profiler k1lib.callbacks.profilers k1lib.callbacks.profilers.computation k1lib.callbacks.profilers.io k1lib.callbacks.profilers.memory k1lib.callbacks.profilers.time k1lib.callbacks.progress k1lib.callbacks.recorder k1lib.callbacks.shorts k1lib.cli k1lib.cli.bio k1lib.cli.entrez k1lib.cli.filt k1lib.cli.gb k1lib.cli.grep k1lib.cli.init k1lib.cli.inp k1lib.cli.kcsv k1lib.cli.kxml k1lib.cli.mgi k1lib.cli.modifier k1lib.cli.nb k1lib.cli.others k1lib.cli.output k1lib.cli.sam k1lib.cli.structural k1lib.cli.trace k1lib.cli.utils k1lib.eqn k1lib.fmt k1lib.graphEqn k1lib.imports k1lib.kdata k1lib.knn k1lib.mo k1lib.schedule k1lib.selector k1lib.viz

modules() (k1lib.selector.ModuleSelector method) ModuleSelector (class in k1lib.selector) moveLastCTo2ndC() (k1lib.mo.Atom method) MovingAvg (class in k1lib) mtmS (class in k1lib.cli.init) MultiheadAttention (class in k1lib.knn)

N

name() (k1lib.cli.output.file property) named_children() (k1lib.selector.ModuleSelector method) named_modules() (k1lib.selector.ModuleSelector method) nBonds() (k1lib.mo.Atom method) next() (k1lib.mo.Atom method) nexts() (k1lib.mo.Atom method)

nn (k1lib.selector.ModuleSelector attribute) node (class in k1lib.cli.kxml) NoFreeElectrons nonHBonds() (k1lib.mo.Atom property) nParams (torch.nn.modules.Module attribute) numDigits() (in module k1lib)

O

Object (class in k1lib) OctetFull oneToMany (class in k1lib.cli.init) OnProgress (class in k1lib.callbacks.shorts)

op (class in k1lib.cli.modifier) op_solidify() (k1lib.cli.modifier.op method) opt() (k1lib.Learner property) optimize() (in module k1lib) origin (class in k1lib.cli.gb)

P

ParamFinder (class in k1lib.callbacks.paramFinder) ParamScheduler (class in k1lib.schedule) paramsContext() (torch.nn.modules.Module method) parse() (in module k1lib.mo) (k1lib.selector.ModuleSelector method) patch() (in module k1lib) peek (class in k1lib.cli.structural) peekF (class in k1lib.cli.structural) perfluoro_ize() (k1lib.mo.Atom method) perlin3d() (in module k1lib) permute (class in k1lib.cli.structural) pick() (k1lib.eqn.Eqns method) plane() (mpl_toolkits.mplot3d.axes3d.Axes3D method) plot() (k1lib.callbacks.callbacks.Timings method) (k1lib.callbacks.confusionMatrix.ConfusionMatrix method) (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.hookParam.HookParam method) (k1lib.callbacks.landscape.Landscape method) (k1lib.callbacks.paramFinder.ParamFinder method) (k1lib.mo.System method)

plotSegments() (in module k1lib.viz) point() (mpl_toolkits.mplot3d.axes3d.Axes3D method) polyfit() (in module k1lib) pools() (k1lib.cli.modifier.applyMp static method) pop() (k1lib.viz.Carousel method) positionalEncode() (torch.Tensor method) preprocess() (in module k1lib.selector) pretty (class in k1lib.cli.kxml) (class in k1lib.cli.nb) (class in k1lib.cli.output) Profiler (class in k1lib.callbacks.profiler) ProgressBar (class in k1lib.callbacks.progress) proportionalSlice() (k1lib.Range static method) props (k1lib.selector.ModuleSelector attribute) purple() (k1lib.fmt.txt static method) pValue() (in module k1lib)

Q

quality() (in module k1lib.cli.bio)

R

raiseEx() (in module k1lib) random() (k1lib.AutoIncrement static method) randomize (class in k1lib.cli.modifier) Range (class in k1lib) range_() (k1lib.Range property) rateLimit (class in k1lib.cli.utils) record() (k1lib.callbacks.recorder.Recorder method) Recorder (class in k1lib.callbacks.recorder) red() (k1lib.fmt.txt static method) remove() (k1lib.callbacks.callbacks.Callbacks method) removeBond() (k1lib.mo.Atom method) removePrefix() (k1lib.callbacks.callbacks.Callbacks method) repeat (class in k1lib.cli.structural) repeatF() (in module k1lib.cli.structural)

repeatFrom (class in k1lib.cli.structural) requireCli() (in module k1lib.cli.inp) reset() (k1lib.callbacks.hookModule.HookModule method) reshape (class in k1lib.cli.structural) resolved() (k1lib.graphEqn.Variable property) restore() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.hookModule.HookModule method) reverse (class in k1lib.cli.utils) revert() (k1lib.RunOnce method) round() (k1lib.eqn.Eqn method) rows (class in k1lib.cli.filt) run() (k1lib.callbacks.paramFinder.ParamFinder method) (k1lib.Learner method) RunOnce (class in k1lib)

S

sameEmpirical() (in module k1lib.mo) sample() (k1lib.Learner static method) (k1lib.selector.ModuleSelector static method) save() (k1lib.eqn.Eqn method) (k1lib.Learner method) (k1lib.viz.Carousel method) saveBytes() (k1lib.viz.Carousel method) saveFile() (k1lib.viz.Carousel method) saveGraphviz() (k1lib.viz.Carousel method) savePIL() (k1lib.viz.Carousel method) savePlt() (k1lib.viz.Carousel method) scaleSvg() (in module k1lib) select() (in module k1lib.selector) (torch.nn.modules.Module method) serial (class in k1lib.cli.init) Settings (class in k1lib) settings (k1lib attribute) shape (in module k1lib.cli.utils) sharedTerms() (k1lib.eqn.Eqn method) show() (k1lib.mo.Atom method) showLog() (in module k1lib) simulate() (k1lib.mo.System method) sin() (k1lib.kdata.FunctionData static method) size (class in k1lib.cli.utils) size() (in module k1lib.fmt) sizeOf() (in module k1lib.fmt)

slice_() (k1lib.Range property) SliceablePlot (class in k1lib.viz) smooth() (in module k1lib.cli.utils) (in module k1lib.schedule) sort (class in k1lib.cli.modifier) sortF (class in k1lib.cli.modifier) spellCheck() (k1lib.eqn.System method) splitW (class in k1lib.cli.structural) squeeze() (in module k1lib) stagger (class in k1lib.cli.modifier) startBatch() (k1lib.schedule.ParamScheduler method) startRun() (k1lib.schedule.ParamScheduler method) state() (k1lib.callbacks.callbacks.Timings property) (k1lib.Object property) stdout (class in k1lib.cli.output) substances() (in module k1lib.mo) suggestedValue() (k1lib.callbacks.paramFinder.ParamFinder property) surface() (mpl_toolkits.mplot3d.axes3d.Axes3D method) suspend() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.callbacks.Callbacks method) (k1lib.callbacks.hookModule.HookModule method) suspendClasses() (k1lib.callbacks.callbacks.Callbacks method) suspendEval() (k1lib.callbacks.callbacks.Callbacks method) System (class in k1lib.eqn) (class in k1lib.mo) system() (k1lib.mo.Atom method)

T

tab() (in module k1lib) table() (in module k1lib.cli.structural) tag() (k1lib.cli.gb.feats static method) tags (class in k1lib.cli.kxml) tee (class in k1lib.cli.output) textToHtml() (in module k1lib) tfFloat() (in module k1lib.kdata) tfImg() (in module k1lib.kdata) till() (k1lib.cli.grep.grep method) time() (in module k1lib.fmt) (k1lib.callbacks.profiler.Profiler property) TimeLimit (class in k1lib.callbacks.limits) TimeProfiler (class in k1lib.callbacks.profilers.time) timer (class in k1lib) Timings (class in k1lib.callbacks.callbacks) timings() (k1lib.callbacks.callbacks.Callbacks property) toAvg (class in k1lib.cli.utils) toBin (class in k1lib.cli.utils) toDict (class in k1lib.cli.structural) toDictF (class in k1lib.cli.structural) toFloat() (in module k1lib.cli.modifier) toIdx (class in k1lib.cli.utils) toImg (in module k1lib.cli.utils) toInt() (in module k1lib.cli.modifier) toIter (class in k1lib.cli.utils) toList (class in k1lib.cli.utils)

toMax (class in k1lib.cli.utils) toMean (in module k1lib.cli.utils) toMin (class in k1lib.cli.utils) toNumpy (class in k1lib.cli.utils) toPIL (class in k1lib.cli.utils) toRange (class in k1lib.cli.utils) toRange() (k1lib.Range method) toRgb (class in k1lib.cli.utils) toRgba (class in k1lib.cli.utils) toSet (class in k1lib.cli.utils) toStr (class in k1lib.cli.utils) toSum (class in k1lib.cli.utils) toTensor (class in k1lib.cli.utils) toType (class in k1lib.cli.utils) toUnit() (k1lib.Range method) trace (class in k1lib.cli.trace) training (k1lib.knn.Identity attribute) (k1lib.knn.Lambda attribute) (k1lib.knn.LinBlock attribute) (k1lib.knn.MultiheadAttention attribute) TrainOnly (class in k1lib.callbacks.limits) transcribe (class in k1lib.cli.bio) translate (class in k1lib.cli.bio) transpose (class in k1lib.cli.structural) tv() (k1lib.cli.modifier.stagger static method) txt (class in k1lib.fmt)

U

underline() (k1lib.fmt.txt static method) unfreeze() (k1lib.selector.ModuleSelector method) union (class in k1lib.cli.filt)

unique (class in k1lib.cli.filt) uniqueBonds() (k1lib.mo.Atom property) uniqueNonHBonds() (k1lib.mo.Atom property) unsqueeze() (in module k1lib.cli.structural)

V

v() (k1lib.mo.System method) ValidOnly (class in k1lib.callbacks.limits) value (k1lib.Wrapper attribute) value() (k1lib.AutoIncrement property) (k1lib.Every property) (k1lib.graphEqn.Variable property) (k1lib.schedule.Fn property)

Variable (class in k1lib.graphEqn)

W

wget() (in module k1lib.cli.inp) window (class in k1lib.cli.structural) withAdvanced() (k1lib.callbacks.callbacks.Callbacks method) withAutoDeclare() (k1lib.Object method) withBackwardHook() (k1lib.callbacks.hookModule.HookModule method) withBasics() (k1lib.callbacks.callbacks.Callbacks method) withCheckpoint() (k1lib.callbacks.callbacks.Callback method) withForwardHook() (k1lib.callbacks.hookModule.HookModule method) withHook() (k1lib.callbacks.hookModule.HookModule method) withMaxRecorder() (k1lib.callbacks.hookModule.HookModule method)

withMeanRecorder() (k1lib.callbacks.hookModule.HookModule method) withMinRecorder() (k1lib.callbacks.hookModule.HookModule method) withQOL() (k1lib.callbacks.callbacks.Callbacks method) withRepr() (k1lib.Object method) withStdRecorder() (k1lib.callbacks.hookModule.HookModule method) wrap() (k1lib.cli.structural.transpose static method) wrapList (class in k1lib.cli.utils) wrapMod (class in k1lib) Wrapper (class in k1lib) wraps() (in module k1lib)

X

x() (k1lib.mo.System method)

Y

yellow() (k1lib.fmt.txt static method)

yieldSentinel (in module k1lib.cli.structural)