Index

_

__call__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.imports._OptionalImports method) (k1lib.Learner method) __contains__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) (k1lib.imports._OptionalImports method) __dir__() (k1lib.eqn.Eqns method) (k1lib.eqn.System method) __getattr__() (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) __getitem__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) (k1lib.Range method) __hash__() (k1lib.eqn.Eqn method) __init__() (k1lib.bioinfo.cli.bio.translate method) (k1lib.bioinfo.cli.filt.columns method) (k1lib.bioinfo.cli.filt.filt method) (k1lib.bioinfo.cli.filt.head method) (k1lib.bioinfo.cli.filt.rows method) (k1lib.bioinfo.cli.grep.grep method) (k1lib.bioinfo.cli.grep.grepTemplate method) (k1lib.bioinfo.cli.grep.grepToTable method) (k1lib.bioinfo.cli.init.manyToMany method) (k1lib.bioinfo.cli.init.manyToManySpecific method) (k1lib.bioinfo.cli.init.oneToMany method) (k1lib.bioinfo.cli.init.serial method) (k1lib.bioinfo.cli.input.cmd method) (k1lib.bioinfo.cli.kxml.display method) (k1lib.bioinfo.cli.kxml.maxDepth method) (k1lib.bioinfo.cli.kxml.tag method) (k1lib.bioinfo.cli.mgi.batch method) (k1lib.bioinfo.cli.modifier.apply method) (k1lib.bioinfo.cli.modifier.applySingle method) (k1lib.bioinfo.cli.modifier.sort method) (k1lib.bioinfo.cli.sam.header method) (k1lib.bioinfo.cli.sam.quality method) (k1lib.bioinfo.cli.structural.AA_ method) (k1lib.bioinfo.cli.structural.accumulate method) (k1lib.bioinfo.cli.structural.joinColumns method) (k1lib.bioinfo.cli.structural.joinList method) (k1lib.bioinfo.cli.structural.permute method) (k1lib.bioinfo.cli.structural.split method) (k1lib.bioinfo.cli.structural.stitch method) (k1lib.bioinfo.cli.structural.table method) (k1lib.bioinfo.cli.structural.toDict method) (k1lib.bioinfo.cli.utils.size method) (k1lib.bioinfo.cli.utils.to1Str method) (k1lib.bioinfo.cli.utils.toStr method) (k1lib.callbacks.confusionMatrix.ConfusionMatrix method) (k1lib.callbacks.frozen.Frozen method) (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.landscape.Landscape method) (k1lib.callbacks.limits.CancelOnLowLoss method) (k1lib.callbacks.loss_accuracy.Accuracy method) (k1lib.callbacks.lossFunctions.shorts.LossLambda method) (k1lib.callbacks.lossFunctions.shorts.LossNLLCross method) (k1lib.callbacks.paramFinder.ParamFinder method) (k1lib.data.CyclicRandomSampler method) (k1lib.data.Data method) (k1lib.data.DataLoader method) (k1lib.data.FunctionDataset method) (k1lib.Domain method) (k1lib.eqn.Eqn method) (k1lib.eqn.Eqns method) (k1lib.eqn.System method) (k1lib.nn.Lambda method) (k1lib.Range method) (k1lib.viz.Carousel method) __invert__() (k1lib.bioinfo.cli.filt.columns method) (k1lib.bioinfo.cli.filt.filt method) (k1lib.bioinfo.cli.filt.head method) (k1lib.bioinfo.cli.filt.rows method) (k1lib.bioinfo.cli.modifier.sort method) (k1lib.Range method)

__iter__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) __len__() (k1lib.callbacks.callbacks.Callbacks method) (k1lib.eqn.Eqn method) (k1lib.eqn.System method) __matmul__() (k1lib.eqn.Eqn method) __ror__() (k1lib.bioinfo.cli.bio.complement method) (k1lib.bioinfo.cli.bio.longAa method) (k1lib.bioinfo.cli.bio.medAa method) (k1lib.bioinfo.cli.bio.transcribe method) (k1lib.bioinfo.cli.bio.translate method) (k1lib.bioinfo.cli.filt.columns method) (k1lib.bioinfo.cli.filt.filt method) (k1lib.bioinfo.cli.filt.head method) (k1lib.bioinfo.cli.filt.intersection method) (k1lib.bioinfo.cli.filt.nonEmptyStream method) (k1lib.bioinfo.cli.filt.rows method) (k1lib.bioinfo.cli.gb.feats method) (k1lib.bioinfo.cli.gb.origin method) (k1lib.bioinfo.cli.grep.grep method) (k1lib.bioinfo.cli.grep.grepTemplate method) (k1lib.bioinfo.cli.grep.grepToTable method) (k1lib.bioinfo.cli.init.manyToMany method) (k1lib.bioinfo.cli.init.manyToManySpecific method) (k1lib.bioinfo.cli.init.oneToMany method) (k1lib.bioinfo.cli.init.serial method) (k1lib.bioinfo.cli.input.cats method) (k1lib.bioinfo.cli.input.cmd method) (k1lib.bioinfo.cli.kxml.display method) (k1lib.bioinfo.cli.kxml.maxDepth method) (k1lib.bioinfo.cli.kxml.node method) (k1lib.bioinfo.cli.kxml.pretty method) (k1lib.bioinfo.cli.kxml.tag method) (k1lib.bioinfo.cli.mgi.batch method) (k1lib.bioinfo.cli.modifier.apply method) (k1lib.bioinfo.cli.modifier.applySingle method) (k1lib.bioinfo.cli.modifier.sort method) (k1lib.bioinfo.cli.output.file method) (k1lib.bioinfo.cli.output.pretty method) (k1lib.bioinfo.cli.sam.header method) (k1lib.bioinfo.cli.sam.quality method) (k1lib.bioinfo.cli.structural.AA_ method) (k1lib.bioinfo.cli.structural.accumulate method) (k1lib.bioinfo.cli.structural.count method) (k1lib.bioinfo.cli.structural.infinite method) (k1lib.bioinfo.cli.structural.joinColumns method) (k1lib.bioinfo.cli.structural.joinList method) (k1lib.bioinfo.cli.structural.joinStreams method) (k1lib.bioinfo.cli.structural.permute method) (k1lib.bioinfo.cli.structural.sample method) (k1lib.bioinfo.cli.structural.split method) (k1lib.bioinfo.cli.structural.stitch method) (k1lib.bioinfo.cli.structural.table method) (k1lib.bioinfo.cli.structural.toDict method) (k1lib.bioinfo.cli.utils.dereference method) (k1lib.bioinfo.cli.utils.equals method) (k1lib.bioinfo.cli.utils.identity method) (k1lib.bioinfo.cli.utils.ignore method) (k1lib.bioinfo.cli.utils.item method) (k1lib.bioinfo.cli.utils.lengths method) (k1lib.bioinfo.cli.utils.reverse method) (k1lib.bioinfo.cli.utils.size method) (k1lib.bioinfo.cli.utils.to1Str method) (k1lib.bioinfo.cli.utils.toAvg method) (k1lib.bioinfo.cli.utils.toIter method) (k1lib.bioinfo.cli.utils.toList method) (k1lib.bioinfo.cli.utils.toNumpy method) (k1lib.bioinfo.cli.utils.toRange method) (k1lib.bioinfo.cli.utils.toSet method) (k1lib.bioinfo.cli.utils.toStr method) (k1lib.bioinfo.cli.utils.toSum method) (k1lib.bioinfo.cli.utils.wrapList method) __round__() (k1lib.eqn.Eqn method) _OptionalImports (class in k1lib.imports)

A

AA_ (class in k1lib.bioinfo.cli.structural) accumulate (class in k1lib.bioinfo.cli.structural) Accuracy (class in k1lib.callbacks.loss_accuracy) append() (k1lib.callbacks.callbacks.Callbacks method) apply (class in k1lib.bioinfo.cli.modifier)

apply() (k1lib.selector.ModuleSelector method) applyF() (k1lib.graphEqn.Expression method) (k1lib.graphEqn.Variable method) applySingle (class in k1lib.bioinfo.cli.modifier) Autosave (class in k1lib.callbacks.shorts)

B

batch (class in k1lib.bioinfo.cli.mgi) BatchLimit (class in k1lib.callbacks.limits) Beep (class in k1lib.callbacks.shorts) beep() (in module k1lib)

beepOnAvailable() (in module k1lib.website) bioinfoSettings (k1lib.bioinfo.cli attribute) blue() (in module k1lib.format) bold() (in module k1lib.format) bound() (k1lib.Range method)

C

Callback (class in k1lib.callbacks.callbacks) Callbacks (class in k1lib.callbacks.callbacks) CancelBatchException CancelEpochException CancelOnExplosion (class in k1lib.callbacks.limits) CancelOnHighAccuracy (class in k1lib.callbacks.limits) CancelOnLowLoss (class in k1lib.callbacks.limits) CancelRunException Carousel (class in k1lib.viz) cat() (in module k1lib.bioinfo.cli.input) (in module k1lib.bioinfo.cli.kcsv) (in module k1lib.bioinfo.cli.sam) cats (class in k1lib.bioinfo.cli.input) cbs() (k1lib.callbacks.callbacks.Callbacks property) (k1lib.Learner property) checkpointGraph() (k1lib.callbacks.callbacks.Callbacks method) checkpoints() (k1lib.callbacks.callbacks.Timings property) children() (k1lib.selector.ModuleSelector method) clear() (k1lib.callbacks.callbacks.Timings method) (k1lib.callbacks.profiler.Profiler method) clearHooks() (k1lib.callbacks.hookModule.HookModule method) clearLine() (in module k1lib) clearProps() (k1lib.selector.ModuleSelector method) close() (in module k1lib) cmd (class in k1lib.bioinfo.cli.input) columns (class in k1lib.bioinfo.cli.filt) combine() (in module k1lib.schedule) complement (class in k1lib.bioinfo.cli.bio) computation() (in module k1lib.format) (k1lib.callbacks.profiler.Profiler property)

ComputationProfiler (class in k1lib.callbacks.profilers.computation) computationRate() (in module k1lib.format) ConfusionMatrix (class in k1lib.callbacks.confusionMatrix) confusionMatrix() (in module k1lib.viz) Constant (class in k1lib.graphEqn) contains() (in module k1lib.bioinfo.cli.filt) context() (k1lib.callbacks.callbacks.Callbacks method) copy() (k1lib.data.DataLoader method) (k1lib.Domain method) (k1lib.eqn.Eqn method) (k1lib.Range method) (k1lib.selector.ModuleSelector method) CoreNormal (class in k1lib.callbacks.core) CoreRNN (class in k1lib.callbacks.core) cosine() (in module k1lib.schedule) (k1lib.schedule.Schedule static method) count (class in k1lib.bioinfo.cli.structural) Cpu (class in k1lib.callbacks.shorts) css() (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.hookParam.HookParam method) (k1lib.callbacks.profilers.computation.ComputationProfiler method) (k1lib.callbacks.profilers.io.IOProfiler method) (k1lib.callbacks.profilers.memory.MemoryProfiler method) (k1lib.callbacks.profilers.time.TimeProfiler method) (k1lib.Learner property) Cuda (class in k1lib.callbacks.shorts) curl() (in module k1lib.bioinfo.cli.input) cut (in module k1lib.bioinfo.cli.filt) cyan() (in module k1lib.format) CyclicRandomSampler (class in k1lib.data)

D

darkcyan() (in module k1lib.format) darkgrey() (in module k1lib.format) Data (class in k1lib.data) data() (k1lib.Learner property) DataLoader (class in k1lib.data) DatasetWithSampler (class in k1lib.data) decay() (in module k1lib.schedule) (k1lib.schedule.Schedule static method) decorate() (in module k1lib.schedule) (k1lib.viz.SliceablePlot static method) deepestDepth() (k1lib.selector.ModuleSelector property) dereference (class in k1lib.bioinfo.cli.utils) derivative() (in module k1lib)

detach() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.loss_accuracy.Loss method) (k1lib.callbacks.lossFunctions.shorts.LossNLLCross method) directParams() (k1lib.selector.ModuleSelector property) display (class in k1lib.bioinfo.cli.kxml) display() (in module k1lib.bioinfo.cli.output) displayF() (k1lib.selector.ModuleSelector property) dl() (k1lib.data.FunctionDataset method) Domain (class in k1lib) DontTrain (class in k1lib.callbacks.limits) DontTrainValid (class in k1lib.callbacks.shorts) dontWrap() (in module k1lib) DType (class in k1lib.callbacks.shorts)

E

efetch() (in module k1lib.bioinfo.cli.entrez) endswith() (in module k1lib.bioinfo.cli.filt) EpochLimit (class in k1lib.callbacks.limits) Eqn (class in k1lib.eqn) Eqns (class in k1lib.eqn) equals (class in k1lib.bioinfo.cli.utils) err() (k1lib.bioinfo.cli.input.cmd property)

esearch() (in module k1lib.bioinfo.cli.entrez) evaluate() (k1lib.Learner method) executeNb() (in module k1lib) exp (k1lib.data.FunctionDataset attribute) exportParams() (torch.nn.modules.torch.nn.modules.Module.Module method) expr (k1lib.graphEqn.Constant attribute) Expression (class in k1lib.graphEqn)

F

feats (class in k1lib.bioinfo.cli.gb) file (class in k1lib.bioinfo.cli.output) filt (class in k1lib.bioinfo.cli.filt) filt() (k1lib.bioinfo.cli.gb.feats static method) filter() (in module k1lib.selector) fixOrder() (k1lib.Range method)

fromDataset() (k1lib.data.Data static method) fromDict() (k1lib.Object static method) fromInts() (k1lib.Domain static method) fromUnit() (k1lib.Range method) Frozen (class in k1lib.callbacks.frozen) FunctionDataset (class in k1lib.data)

G

getParamsVector() (torch.nn.modules.torch.nn.modules.Module.Module method) go() (in module k1lib.bioinfo.cli.bio) GradientClipping (class in k1lib.callbacks.limits) GradientClippingNorm (class in k1lib.callbacks.limits)

green() (in module k1lib.format) grep (class in k1lib.bioinfo.cli.grep) grepTemplate (class in k1lib.bioinfo.cli.grep) grepToTable (class in k1lib.bioinfo.cli.grep) grey() (in module k1lib.format)

H

head (class in k1lib.bioinfo.cli.filt) header (class in k1lib.bioinfo.cli.sam) headerIdx() (in module k1lib.bioinfo.cli.utils)

headOut() (in module k1lib.bioinfo.cli.output) highlight() (k1lib.selector.ModuleSelector method) HookModule (class in k1lib.callbacks.hookModule) HookParam (class in k1lib.callbacks.hookParam)

I

identity (class in k1lib.bioinfo.cli.utils) Identity (class in k1lib.nn) identity() (in module k1lib.format) idx (k1lib.graphEqn.Variable attribute) ignore (class in k1lib.bioinfo.cli.utils) ignoreWarnings (class in k1lib) importParams() (torch.nn.modules.torch.nn.modules.Module.Module method) infinite (class in k1lib.bioinfo.cli.structural) inRange() (in module k1lib.bioinfo.cli.filt) insertColumn() (in module k1lib.bioinfo.cli.structural) insertIdColumn() (in module k1lib.bioinfo.cli.structural) insertRow() (in module k1lib.bioinfo.cli.structural) inSet() (in module k1lib.bioinfo.cli.filt) InspectBatch (class in k1lib.callbacks.shorts)

InspectLoss (class in k1lib.callbacks.shorts) InspectOutput (class in k1lib.callbacks.shorts) integrate() (in module k1lib) intersection (class in k1lib.bioinfo.cli.filt) intIter() (k1lib.Domain method) (k1lib.Range method) inverse (k1lib.data.FunctionDataset attribute) inverse() (in module k1lib) io() (k1lib.callbacks.profiler.Profiler property) IOProfiler (class in k1lib.callbacks.profilers.io) isNumeric() (in module k1lib) (in module k1lib.bioinfo.cli.filt) isValue() (in module k1lib.bioinfo.cli.filt) item (class in k1lib.bioinfo.cli.utils) item() (in module k1lib.format)

J

join() (k1lib.eqn.Eqn method) joinColumns (class in k1lib.bioinfo.cli.structural)

joinList (class in k1lib.bioinfo.cli.structural) joinStreams (class in k1lib.bioinfo.cli.structural)

K

k1lib module k1lib.bioinfo module k1lib.bioinfo.cli module k1lib.bioinfo.cli.bio module k1lib.bioinfo.cli.entrez module k1lib.bioinfo.cli.filt module k1lib.bioinfo.cli.gb module k1lib.bioinfo.cli.grep module k1lib.bioinfo.cli.init module k1lib.bioinfo.cli.input module k1lib.bioinfo.cli.kcsv module k1lib.bioinfo.cli.kxml module k1lib.bioinfo.cli.mgi module k1lib.bioinfo.cli.modifier module k1lib.bioinfo.cli.output module k1lib.bioinfo.cli.sam module k1lib.bioinfo.cli.structural module k1lib.bioinfo.cli.utils module k1lib.callbacks module k1lib.callbacks.callbacks module k1lib.callbacks.confusionMatrix module k1lib.callbacks.core module k1lib.callbacks.frozen module k1lib.callbacks.hookModule module k1lib.callbacks.hookParam module

k1lib.callbacks.landscape module k1lib.callbacks.limits module k1lib.callbacks.loss_accuracy module k1lib.callbacks.lossFunctions module k1lib.callbacks.lossFunctions.shorts module k1lib.callbacks.paramFinder module k1lib.callbacks.profiler module k1lib.callbacks.profilers module k1lib.callbacks.profilers.computation module k1lib.callbacks.profilers.io module k1lib.callbacks.profilers.memory module k1lib.callbacks.profilers.time module k1lib.callbacks.progress module k1lib.callbacks.recorder module k1lib.callbacks.shorts module k1lib.data module k1lib.eqn module k1lib.format module k1lib.graphEqn module k1lib.imports module k1lib.nn module k1lib.schedule module k1lib.selector module k1lib.viz module k1lib.website module

L

l() (k1lib.callbacks.callbacks.Callbacks property) Lambda (class in k1lib.nn) Landscape (class in k1lib.callbacks.landscape) Landscape() (k1lib.callbacks.loss_accuracy.Accuracy property) (k1lib.callbacks.loss_accuracy.Loss property) Learner (class in k1lib) leaves() (k1lib.graphEqn.Variable property) lengths (class in k1lib.bioinfo.cli.utils) limitChars() (in module k1lib) limitLines() (in module k1lib) linear (k1lib.data.FunctionDataset attribute)

linear() (in module k1lib.schedule) (k1lib.schedule.Schedule static method) listToTable() (in module k1lib.bioinfo.cli.structural) load() (k1lib.Learner static method) log (k1lib.data.FunctionDataset attribute) longAa (class in k1lib.bioinfo.cli.bio) Loss (class in k1lib.callbacks.loss_accuracy) lossF() (k1lib.Learner property) LossLambda (class in k1lib.callbacks.lossFunctions.shorts) LossNLLCross (class in k1lib.callbacks.lossFunctions.shorts) lower() (in module k1lib.bioinfo.cli.modifier) lstrip() (in module k1lib.bioinfo.cli.modifier)

M

manyToMany (class in k1lib.bioinfo.cli.init) manyToManySpecific (class in k1lib.bioinfo.cli.init) maxDepth (class in k1lib.bioinfo.cli.kxml) medAa (class in k1lib.bioinfo.cli.bio) memory() (k1lib.callbacks.profiler.Profiler property) MemoryProfiler (class in k1lib.callbacks.profilers.memory) model() (k1lib.Learner property) ModifyBatch (class in k1lib.callbacks.shorts) ModifyLoss (class in k1lib.callbacks.shorts) ModifyOutput (class in k1lib.callbacks.shorts) module k1lib k1lib.bioinfo k1lib.bioinfo.cli k1lib.bioinfo.cli.bio k1lib.bioinfo.cli.entrez k1lib.bioinfo.cli.filt k1lib.bioinfo.cli.gb k1lib.bioinfo.cli.grep k1lib.bioinfo.cli.init k1lib.bioinfo.cli.input k1lib.bioinfo.cli.kcsv k1lib.bioinfo.cli.kxml k1lib.bioinfo.cli.mgi k1lib.bioinfo.cli.modifier k1lib.bioinfo.cli.output k1lib.bioinfo.cli.sam k1lib.bioinfo.cli.structural k1lib.bioinfo.cli.utils k1lib.callbacks k1lib.callbacks.callbacks k1lib.callbacks.confusionMatrix k1lib.callbacks.core k1lib.callbacks.frozen k1lib.callbacks.hookModule k1lib.callbacks.hookParam k1lib.callbacks.landscape k1lib.callbacks.limits k1lib.callbacks.loss_accuracy k1lib.callbacks.lossFunctions k1lib.callbacks.lossFunctions.shorts k1lib.callbacks.paramFinder k1lib.callbacks.profiler k1lib.callbacks.profilers k1lib.callbacks.profilers.computation k1lib.callbacks.profilers.io k1lib.callbacks.profilers.memory k1lib.callbacks.profilers.time k1lib.callbacks.progress k1lib.callbacks.recorder k1lib.callbacks.shorts k1lib.data k1lib.eqn k1lib.format k1lib.graphEqn k1lib.imports k1lib.nn k1lib.schedule k1lib.selector k1lib.viz k1lib.website

modules() (k1lib.selector.ModuleSelector method) ModuleSelector (class in k1lib.selector)

N

named_children() (k1lib.selector.ModuleSelector method) named_modules() (k1lib.selector.ModuleSelector method)

node (class in k1lib.bioinfo.cli.kxml) nonEmptyStream (class in k1lib.bioinfo.cli.filt) numDigits() (in module k1lib)

O

Object (class in k1lib) oneCycle() (in module k1lib.schedule) (k1lib.schedule.Schedule static method)

oneToMany (class in k1lib.bioinfo.cli.init) opt() (k1lib.Learner property) optimize() (in module k1lib) origin (class in k1lib.bioinfo.cli.gb)

P

parameters() (k1lib.selector.ModuleSelector method) ParamFinder (class in k1lib.callbacks.paramFinder) ParamScheduler (class in k1lib.schedule) paramsContext() (torch.nn.modules.torch.nn.modules.Module.Module method) parse() (k1lib.selector.ModuleSelector method) patch() (in module k1lib) pause() (k1lib.callbacks.callbacks.Callback method) permute (class in k1lib.bioinfo.cli.structural) pick() (k1lib.eqn.Eqns method) plot() (k1lib.callbacks.callbacks.Timings method) (k1lib.callbacks.confusionMatrix.ConfusionMatrix method) (k1lib.callbacks.hookModule.HookModule method) (k1lib.callbacks.hookParam.HookParam method) (k1lib.callbacks.landscape.Landscape method) (k1lib.callbacks.paramFinder.ParamFinder method)

plotSegments() (in module k1lib.viz) polyfit() (in module k1lib) preserveDevice() (torch.nn.modules.torch.nn.modules.Module.Module method) pretty (class in k1lib.bioinfo.cli.kxml) (class in k1lib.bioinfo.cli.output) Profiler (class in k1lib.callbacks.profiler) ProgressBar (class in k1lib.callbacks.progress) proportionalSlice() (k1lib.Range static method) purple() (in module k1lib.format)

Q

quality (class in k1lib.bioinfo.cli.sam)

R

raiseEx() (in module k1lib) Range (class in k1lib) range_() (k1lib.Range property) record() (k1lib.callbacks.recorder.Recorder method) Recorder (class in k1lib.callbacks.recorder) red() (in module k1lib.format) remove() (in module k1lib.bioinfo.cli.modifier) (k1lib.callbacks.callbacks.Callbacks method) removePrefix() (k1lib.callbacks.callbacks.Callbacks method) replace() (in module k1lib.bioinfo.cli.modifier) requireCli() (in module k1lib.bioinfo.cli.input) reset() (k1lib.callbacks.hookModule.HookModule method) resolve() (k1lib.graphEqn.Variable method)

resolved() (k1lib.graphEqn.Expression property) (k1lib.graphEqn.Variable property) restore() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.hookModule.HookModule method) reverse (class in k1lib.bioinfo.cli.utils) round() (k1lib.eqn.Eqn method) rows (class in k1lib.bioinfo.cli.filt) rstrip() (in module k1lib.bioinfo.cli.modifier) run() (k1lib.callbacks.paramFinder.ParamFinder method) (k1lib.callbacks.profilers.computation.ComputationProfiler method) (k1lib.callbacks.profilers.io.IOProfiler method) (k1lib.callbacks.profilers.memory.MemoryProfiler method) (k1lib.callbacks.profilers.time.TimeProfiler method) (k1lib.Learner method)

S

sample (class in k1lib.bioinfo.cli.structural) save() (k1lib.eqn.Eqn method) (k1lib.Learner method) (k1lib.viz.Carousel method) saveBytes() (k1lib.viz.Carousel method) saveFile() (k1lib.viz.Carousel method) saveGraphviz() (k1lib.viz.Carousel method) savePIL() (k1lib.viz.Carousel method) savePlt() (k1lib.viz.Carousel method) Schedule (class in k1lib.schedule) select() (in module k1lib.selector) selected() (k1lib.selector.ModuleSelector method) selectedProps (k1lib.selector.ModuleSelector attribute) serial (class in k1lib.bioinfo.cli.init) shape (in module k1lib.bioinfo.cli.utils) sharedTerms() (k1lib.eqn.Eqn method) showLog() (in module k1lib) simplify() (k1lib.graphEqn.Variable method) sin (k1lib.data.FunctionDataset attribute) size (class in k1lib.bioinfo.cli.utils) size() (in module k1lib.format) slice_() (k1lib.Range property) SliceablePlot (class in k1lib.viz)

smooth() (in module k1lib) solve() (k1lib.graphEqn.Variable method) sort (class in k1lib.bioinfo.cli.modifier) spellCheck() (k1lib.eqn.System method) split (class in k1lib.bioinfo.cli.structural) split() (k1lib.data.FunctionDataset method) splitColumns (in module k1lib.bioinfo.cli.structural) squeeze() (in module k1lib) startBatch() (k1lib.schedule.Schedule method) startRun() (k1lib.schedule.ParamScheduler method) startswith() (in module k1lib.bioinfo.cli.filt) state() (k1lib.callbacks.callbacks.Timings property) (k1lib.Object property) stats() (in module k1lib) stitch (class in k1lib.bioinfo.cli.structural) strip() (in module k1lib.bioinfo.cli.modifier) suggestedValue() (k1lib.callbacks.paramFinder.ParamFinder property) suspend() (k1lib.callbacks.callbacks.Callback method) (k1lib.callbacks.callbacks.Callbacks method) (k1lib.callbacks.hookModule.HookModule method) suspendClasses() (k1lib.callbacks.callbacks.Callbacks method) suspendEval() (k1lib.callbacks.callbacks.Callbacks method) System (class in k1lib.eqn)

T

tab() (in module k1lib) table (class in k1lib.bioinfo.cli.structural) tableFromList() (in module k1lib.bioinfo.cli.structural) tag (class in k1lib.bioinfo.cli.kxml) tag() (k1lib.bioinfo.cli.gb.feats static method) textToHtml() (in module k1lib) till() (k1lib.bioinfo.cli.grep.grep method) time() (in module k1lib.format) (k1lib.callbacks.profiler.Profiler property) TimeLimit (class in k1lib.callbacks.limits) TimeProfiler (class in k1lib.callbacks.profilers.time) Timings (class in k1lib.callbacks.callbacks) timings() (k1lib.callbacks.callbacks.Callbacks property) to1Str (class in k1lib.bioinfo.cli.utils) toAvg (class in k1lib.bioinfo.cli.utils) toDict (class in k1lib.bioinfo.cli.structural)

toFloat() (in module k1lib.bioinfo.cli.modifier) toInt() (in module k1lib.bioinfo.cli.modifier) toIter (class in k1lib.bioinfo.cli.utils) toList (class in k1lib.bioinfo.cli.utils) toNumpy (class in k1lib.bioinfo.cli.utils) toRange (class in k1lib.bioinfo.cli.utils) toRange() (k1lib.Range method) torch.nn.modules.Module (built-in class) toSet (class in k1lib.bioinfo.cli.utils) toStr (class in k1lib.bioinfo.cli.utils) toSum (class in k1lib.bioinfo.cli.utils) toUnit() (k1lib.Range method) tpAvailable() (k1lib.callbacks.profilers.computation.ComputationProfiler property) transcribe (class in k1lib.bioinfo.cli.bio) translate (class in k1lib.bioinfo.cli.bio) transpose (in module k1lib.bioinfo.cli.structural) trial (k1lib.graphEqn.Constant attribute)

U

underline() (in module k1lib.format)

unresolve() (k1lib.graphEqn.Variable method) upper() (in module k1lib.bioinfo.cli.modifier)

V

value (k1lib.graphEqn.Constant attribute) value() (k1lib.graphEqn.Expression property) (k1lib.schedule.Schedule property)

Variable (class in k1lib.graphEqn)

W

wget() (in module k1lib.bioinfo.cli.input) withAccuracy() (k1lib.callbacks.callbacks.Callbacks method) withAdvanced() (k1lib.callbacks.callbacks.Callbacks method) withAutoDeclare() (k1lib.Object method) withAutosave() (k1lib.callbacks.callbacks.Callbacks method) withBackwardHook() (k1lib.callbacks.hookModule.HookModule method) withBasics() (k1lib.callbacks.callbacks.Callbacks method) withBatchLimit() (k1lib.callbacks.callbacks.Callbacks method) withBeep() (k1lib.callbacks.callbacks.Callbacks method) withCancelOnExplosion() (k1lib.callbacks.callbacks.Callbacks method) withCancelOnHighAccuracy() (k1lib.callbacks.callbacks.Callbacks method) withCancelOnLowLoss() (k1lib.callbacks.callbacks.Callbacks method) withCheckpoint() (k1lib.callbacks.callbacks.Callback method) withConfusionMatrix() (k1lib.callbacks.callbacks.Callbacks method) withCoreNormal() (k1lib.callbacks.callbacks.Callbacks method) withCoreRNN() (k1lib.callbacks.callbacks.Callbacks method) withCpu() (k1lib.callbacks.callbacks.Callbacks method) withCuda() (k1lib.callbacks.callbacks.Callbacks method) withDontTrain() (k1lib.callbacks.callbacks.Callbacks method) withDontTrainValid() (k1lib.callbacks.callbacks.Callbacks method) withDType() (k1lib.callbacks.callbacks.Callbacks method) withEpochLimit() (k1lib.callbacks.callbacks.Callbacks method) withForwardHook() (k1lib.callbacks.hookModule.HookModule method) withFrozen() (k1lib.callbacks.callbacks.Callbacks method) withGradientClipping() (k1lib.callbacks.callbacks.Callbacks method) withGradientClippingNorm() (k1lib.callbacks.callbacks.Callbacks method) withHook() (k1lib.callbacks.hookModule.HookModule method)

withHookModule() (k1lib.callbacks.callbacks.Callbacks method) withHookParam() (k1lib.callbacks.callbacks.Callbacks method) withInspectBatch() (k1lib.callbacks.callbacks.Callbacks method) withInspectLoss() (k1lib.callbacks.callbacks.Callbacks method) withInspectOutput() (k1lib.callbacks.callbacks.Callbacks method) withLandscape() (k1lib.callbacks.callbacks.Callbacks method) withLoss() (k1lib.callbacks.callbacks.Callbacks method) withLossCrossEntropy() (k1lib.callbacks.callbacks.Callbacks method) withLossLambda() (k1lib.callbacks.callbacks.Callbacks method) withLossNLL() (k1lib.callbacks.callbacks.Callbacks method) withMaxRecorder() (k1lib.callbacks.hookModule.HookModule method) withMeanRecorder() (k1lib.callbacks.hookModule.HookModule method) withMinRecorder() (k1lib.callbacks.hookModule.HookModule method) withModifyBatch() (k1lib.callbacks.callbacks.Callbacks method) withModifyLoss() (k1lib.callbacks.callbacks.Callbacks method) withModifyOutput() (k1lib.callbacks.callbacks.Callbacks method) withParamFinder() (k1lib.callbacks.callbacks.Callbacks method) withParamScheduler() (k1lib.callbacks.callbacks.Callbacks method) withProfiler() (k1lib.callbacks.callbacks.Callbacks method) withProgressBar() (k1lib.callbacks.callbacks.Callbacks method) withQOL() (k1lib.callbacks.callbacks.Callbacks method) withRecorder() (k1lib.callbacks.callbacks.Callbacks method) withRepr() (k1lib.Object method) withs() (k1lib.callbacks.callbacks.Callbacks property) withStdRecorder() (k1lib.callbacks.hookModule.HookModule method) withTimeLimit() (k1lib.callbacks.callbacks.Callbacks method) wrapList (class in k1lib.bioinfo.cli.utils)

X

xs() (k1lib.data.FunctionDataset property)

Y

yellow() (in module k1lib.format)

ys() (k1lib.data.FunctionDataset property)